Strain Fitness in Variovorax sp. SCN45 around GFF6718

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6717 and GFF6718 are separated by 106 nucleotidesGFF6718 and GFF6719 are separated by 7 nucleotidesGFF6719 and GFF6720 are separated by 15 nucleotides GFF6717 - hypothetical protein, at 26,152 to 28,392 GFF6717 GFF6718 - no description, at 28,499 to 28,918 GFF6718 GFF6719 - hypothetical protein, at 28,926 to 29,489 GFF6719 GFF6720 - no description, at 29,505 to 30,554 GFF6720 Position (kb) 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 27.538 kb on + strand, within GFF6717at 27.539 kb on - strand, within GFF6717at 27.541 kb on + strand, within GFF6717at 27.541 kb on + strand, within GFF6717at 27.541 kb on + strand, within GFF6717at 27.542 kb on - strand, within GFF6717at 27.542 kb on - strand, within GFF6717at 27.684 kb on + strand, within GFF6717at 27.685 kb on - strand, within GFF6717at 27.685 kb on - strand, within GFF6717at 27.685 kb on - strand, within GFF6717at 27.685 kb on - strand, within GFF6717at 27.760 kb on + strand, within GFF6717at 27.761 kb on - strand, within GFF6717at 27.852 kb on + strand, within GFF6717at 27.852 kb on + strand, within GFF6717at 27.853 kb on - strand, within GFF6717at 27.853 kb on - strand, within GFF6717at 28.015 kb on + strand, within GFF6717at 28.015 kb on + strand, within GFF6717at 28.016 kb on - strand, within GFF6717at 28.047 kb on + strand, within GFF6717at 28.047 kb on + strand, within GFF6717at 28.102 kb on + strand, within GFF6717at 28.103 kb on - strand, within GFF6717at 28.118 kb on + strand, within GFF6717at 28.153 kb on + strand, within GFF6717at 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.179 kb on + strandat 28.179 kb on + strandat 28.179 kb on + strandat 28.180 kb on - strandat 28.288 kb on + strandat 28.315 kb on + strandat 28.315 kb on + strandat 28.316 kb on - strandat 28.316 kb on - strandat 28.575 kb on - strand, within GFF6718at 28.609 kb on + strand, within GFF6718at 28.839 kb on - strand, within GFF6718at 29.070 kb on - strand, within GFF6719at 29.079 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.220 kb on + strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.334 kb on + strand, within GFF6719at 29.335 kb on - strand, within GFF6719at 29.335 kb on - strand, within GFF6719at 29.369 kb on + strand, within GFF6719at 29.370 kb on - strand, within GFF6719at 29.700 kb on + strand, within GFF6720at 29.701 kb on - strand, within GFF6720at 29.703 kb on + strand, within GFF6720

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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27,538 + GFF6717 0.62 -0.6
27,539 - GFF6717 0.62 +0.6
27,541 + GFF6717 0.62 +0.4
27,541 + GFF6717 0.62 -0.6
27,541 + GFF6717 0.62 +0.0
27,542 - GFF6717 0.62 +0.6
27,542 - GFF6717 0.62 -0.8
27,684 + GFF6717 0.68 +0.2
27,685 - GFF6717 0.68 +0.2
27,685 - GFF6717 0.68 +0.0
27,685 - GFF6717 0.68 +0.7
27,685 - GFF6717 0.68 +1.1
27,760 + GFF6717 0.72 -0.2
27,761 - GFF6717 0.72 -0.3
27,852 + GFF6717 0.76 -0.2
27,852 + GFF6717 0.76 -0.6
27,853 - GFF6717 0.76 -0.0
27,853 - GFF6717 0.76 -1.0
28,015 + GFF6717 0.83 +1.4
28,015 + GFF6717 0.83 -1.1
28,016 - GFF6717 0.83 -0.7
28,047 + GFF6717 0.85 -0.3
28,047 + GFF6717 0.85 -0.6
28,102 + GFF6717 0.87 -1.0
28,103 - GFF6717 0.87 -0.2
28,118 + GFF6717 0.88 +1.6
28,153 + GFF6717 0.89 -0.1
28,177 + +1.4
28,177 + +0.1
28,177 + -0.5
28,177 + -1.0
28,177 + +0.2
28,177 + +0.1
28,177 + -0.5
28,178 - -0.9
28,178 - +0.6
28,178 - -1.9
28,178 - +0.2
28,178 - +0.5
28,178 - -1.4
28,178 - -0.5
28,178 - -0.2
28,178 - +1.2
28,178 - -1.2
28,179 + +0.4
28,179 + +1.2
28,179 + -0.1
28,180 - -0.1
28,288 + +0.3
28,315 + -0.6
28,315 + +0.3
28,316 - -0.3
28,316 - -0.2
28,575 - GFF6718 0.18 -0.4
28,609 + GFF6718 0.26 +0.1
28,839 - GFF6718 0.81 +0.6
29,070 - GFF6719 0.26 +0.2
29,079 + GFF6719 0.27 +0.8
29,169 + GFF6719 0.43 -1.4
29,169 + GFF6719 0.43 -0.8
29,169 + GFF6719 0.43 -0.7
29,169 + GFF6719 0.43 +0.4
29,169 + GFF6719 0.43 +1.8
29,170 - GFF6719 0.43 +0.1
29,170 - GFF6719 0.43 -0.4
29,170 - GFF6719 0.43 -0.3
29,170 - GFF6719 0.43 +0.1
29,170 - GFF6719 0.43 -0.1
29,170 - GFF6719 0.43 -0.3
29,170 - GFF6719 0.43 -0.0
29,170 - GFF6719 0.43 -1.6
29,220 + GFF6719 0.52 -0.5
29,221 - GFF6719 0.52 +1.1
29,221 - GFF6719 0.52 +0.2
29,221 - GFF6719 0.52 +0.1
29,221 - GFF6719 0.52 +0.0
29,221 - GFF6719 0.52 +2.0
29,334 + GFF6719 0.72 -0.2
29,335 - GFF6719 0.73 -0.8
29,335 - GFF6719 0.73 -0.5
29,369 + GFF6719 0.79 +0.1
29,370 - GFF6719 0.79 -0.5
29,700 + GFF6720 0.19 +0.6
29,701 - GFF6720 0.19 -0.8
29,703 + GFF6720 0.19 +0.7

Or see this region's nucleotide sequence