Strain Fitness in Variovorax sp. SCN45 around GFF6682

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
57,884	+		GFF6681	0.59	-0.8
57,884	+		GFF6681	0.59	-0.8
57,884	+		GFF6681	0.59	-0.0
57,884	+		GFF6681	0.59	-0.3
57,884	+		GFF6681	0.59	+0.4
57,885	-		GFF6681	0.59	+0.1
57,885	-		GFF6681	0.59	+0.4
57,920	+		GFF6681	0.61	+2.1
57,920	+		GFF6681	0.61	-0.3
57,920	+		GFF6681	0.61	-0.9
57,920	+		GFF6681	0.61	-0.3
57,920	+		GFF6681	0.61	-0.6
57,920	+		GFF6681	0.61	-0.7
57,920	+		GFF6681	0.61	-0.1
57,920	+		GFF6681	0.61	-0.4
57,920	+		GFF6681	0.61	+2.2
57,920	+		GFF6681	0.61	-0.5
57,920	+		GFF6681	0.61	-0.2
57,921	-		GFF6681	0.61	+1.8
57,921	-		GFF6681	0.61	+0.3
57,921	-		GFF6681	0.61	+0.0
57,921	-		GFF6681	0.61	+0.2
57,921	-		GFF6681	0.61	+0.6
57,921	-		GFF6681	0.61	+0.2
57,921	-		GFF6681	0.61	-1.3
57,921	-		GFF6681	0.61	-0.5
57,921	-		GFF6681	0.61	-1.1
58,026	-		GFF6681	0.65	-1.1
58,049	+		GFF6681	0.66	-0.4
58,049	+		GFF6681	0.66	-0.5
58,050	-		GFF6681	0.67	+0.1
58,169	+		GFF6681	0.72	+0.0
58,170	-		GFF6681	0.72	+0.0
58,170	-		GFF6681	0.72	+0.9
58,181	+		GFF6681	0.73	-0.2
58,238	+		GFF6681	0.75	+0.1
58,238	+		GFF6681	0.75	-0.9
58,238	+		GFF6681	0.75	-0.0
58,239	-		GFF6681	0.75	-0.7
58,376	+		GFF6681	0.81	-0.4
58,376	+		GFF6681	0.81	+0.7
58,376	+		GFF6681	0.81	-0.1
58,376	+		GFF6681	0.81	+0.8
58,376	+		GFF6681	0.81	-0.2
58,377	-		GFF6681	0.82	+0.1
58,377	-		GFF6681	0.82	+1.1
58,436	+		GFF6681	0.84	-0.5
58,436	+		GFF6681	0.84	+0.5
58,436	+		GFF6681	0.84	-0.1
58,436	+		GFF6681	0.84	+1.2
58,437	-		GFF6681	0.84	+1.1
58,437	-		GFF6681	0.84	+1.5
58,442	+		GFF6681	0.85	-0.2
58,442	+		GFF6681	0.85	-0.9
58,442	+		GFF6681	0.85	-2.0
58,442	+		GFF6681	0.85	-1.1
58,442	+		GFF6681	0.85	+0.1
58,442	+		GFF6681	0.85	+0.3
58,442	+		GFF6681	0.85	+0.0
58,442	+		GFF6681	0.85	+1.5
58,442	+		GFF6681	0.85	-0.5
58,443	-		GFF6681	0.85	-0.6
58,443	-		GFF6681	0.85	+1.5
58,443	-		GFF6681	0.85	-0.1
58,443	-		GFF6681	0.85	-1.5
58,443	-		GFF6681	0.85	-0.4
58,443	-		GFF6681	0.85	+0.4
58,443	-		GFF6681	0.85	-2.1
58,696	+				-0.4
58,696	+				-0.4
58,696	+				+0.5
58,696	+				+1.5
58,697	-				-1.8
58,697	-				-0.1
58,697	-				-0.3
58,697	-				+0.9
58,697	-				-0.2
58,829	+				+2.1
59,045	+		GFF6682	0.15	-0.6
59,046	-		GFF6682	0.15	-1.3
59,046	-		GFF6682	0.15	-0.9
59,046	-		GFF6682	0.15	-2.5
59,046	-		GFF6682	0.15	-0.7
59,046	-		GFF6682	0.15	-1.4
59,118	-		GFF6682	0.19	-0.8
59,240	+		GFF6682	0.28	-0.5
59,240	+		GFF6682	0.28	-0.2
59,240	+		GFF6682	0.28	-1.1
59,240	+		GFF6682	0.28	+0.5
59,240	+		GFF6682	0.28	+0.1
59,240	+		GFF6682	0.28	-0.2
59,240	+		GFF6682	0.28	-0.3
59,241	-		GFF6682	0.28	-0.4
59,241	-		GFF6682	0.28	-0.3
59,241	-		GFF6682	0.28	-0.7
59,319	-		GFF6682	0.33	-0.9
59,556	-		GFF6682	0.49	+1.1
59,556	-		GFF6682	0.49	+0.2
59,789	+		GFF6682	0.64	-0.6
59,789	+		GFF6682	0.64	-0.8
59,789	+		GFF6682	0.64	-1.7
59,790	-		GFF6682	0.64	-0.4
59,790	-		GFF6682	0.64	-0.5
59,790	-		GFF6682	0.64	+0.1
59,790	-		GFF6682	0.64	-0.2
59,823	-		GFF6682	0.67	-1.4
59,823	-		GFF6682	0.67	-0.6
59,823	-		GFF6682	0.67	-0.1
60,188	+				-2.7
60,188	+				-2.0
60,188	+				+0.8
60,188	+				-0.2
60,189	-				-0.2
60,189	-				+0.2
60,189	-				-0.0
60,455	+				-0.8
60,455	+				-0.2
60,500	+		GFF6683	0.12	-0.7
60,500	+		GFF6683	0.12	+0.5
60,731	+		GFF6683	0.28	+0.4
60,743	+		GFF6683	0.29	-0.4
60,744	-		GFF6683	0.29	-0.2
60,752	+		GFF6683	0.30	+0.3
61,061	+		GFF6683	0.52	-0.8
61,061	+		GFF6683	0.52	-0.3
61,061	+		GFF6683	0.52	-0.4
61,061	+		GFF6683	0.52	+1.1
61,062	-		GFF6683	0.52	-0.3
61,062	-		GFF6683	0.52	+0.1
61,070	+		GFF6683	0.52	-0.2