Strain Fitness in Variovorax sp. SCN45 around GFF6672

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6670 and GFF6671 are separated by 39 nucleotidesGFF6671 and GFF6672 overlap by 4 nucleotidesGFF6672 and GFF6673 are separated by 221 nucleotidesGFF6673 and GFF6674 are separated by 13 nucleotides GFF6670 - LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20), at 46,807 to 47,358 GFF6670 GFF6671 - Membrane proteins related to metalloendopeptidases, at 47,398 to 48,318 GFF6671 GFF6672 - no description, at 48,315 to 48,473 GFF6672 GFF6673 - Membrane protein, at 48,695 to 49,264 GFF6673 GFF6674 - Predicted membrane protein, at 49,278 to 49,682 GFF6674 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2 3at 47.776 kb on + strand, within GFF6671at 47.776 kb on + strand, within GFF6671at 47.776 kb on + strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.777 kb on - strand, within GFF6671at 47.797 kb on + strand, within GFF6671at 47.798 kb on - strand, within GFF6671at 47.798 kb on - strand, within GFF6671at 48.098 kb on - strand, within GFF6671at 48.098 kb on - strand, within GFF6671at 48.098 kb on - strand, within GFF6671at 48.098 kb on - strand, within GFF6671at 48.098 kb on - strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.154 kb on + strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.155 kb on - strand, within GFF6671at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.584 kb on + strandat 48.584 kb on + strandat 48.584 kb on + strandat 48.584 kb on + strandat 48.585 kb on - strandat 48.585 kb on - strandat 48.585 kb on - strandat 48.585 kb on - strandat 48.670 kb on + strandat 48.670 kb on + strandat 48.670 kb on + strandat 48.671 kb on - strandat 48.671 kb on - strandat 48.671 kb on - strandat 48.671 kb on - strandat 48.671 kb on - strandat 48.756 kb on + strand, within GFF6673at 48.757 kb on - strand, within GFF6673at 48.757 kb on - strand, within GFF6673at 48.757 kb on - strand, within GFF6673at 48.770 kb on + strand, within GFF6673at 48.771 kb on - strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.118 kb on + strand, within GFF6673at 49.118 kb on + strand, within GFF6673at 49.118 kb on + strand, within GFF6673at 49.208 kb on + strandat 49.208 kb on + strandat 49.208 kb on + strandat 49.209 kb on - strandat 49.209 kb on - strandat 49.262 kb on + strandat 49.262 kb on + strandat 49.262 kb on + strandat 49.263 kb on - strandat 49.263 kb on - strandat 49.307 kb on + strandat 49.308 kb on - strandat 49.369 kb on + strand, within GFF6674at 49.369 kb on + strand, within GFF6674at 49.369 kb on + strand, within GFF6674at 49.369 kb on + strand, within GFF6674at 49.370 kb on - strand, within GFF6674at 49.370 kb on - strand, within GFF6674at 49.370 kb on - strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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47,776 + GFF6671 0.41 -0.6
47,776 + GFF6671 0.41 +0.3
47,776 + GFF6671 0.41 +0.3
47,777 - GFF6671 0.41 -0.2
47,777 - GFF6671 0.41 -0.7
47,777 - GFF6671 0.41 -1.4
47,777 - GFF6671 0.41 -1.1
47,777 - GFF6671 0.41 +0.1
47,777 - GFF6671 0.41 -1.8
47,777 - GFF6671 0.41 +3.1
47,777 - GFF6671 0.41 -0.6
47,777 - GFF6671 0.41 -1.0
47,777 - GFF6671 0.41 +0.4
47,797 + GFF6671 0.43 +0.4
47,798 - GFF6671 0.43 +0.6
47,798 - GFF6671 0.43 -0.1
48,098 - GFF6671 0.76 -0.7
48,098 - GFF6671 0.76 +0.2
48,098 - GFF6671 0.76 +0.0
48,098 - GFF6671 0.76 -0.3
48,098 - GFF6671 0.76 -1.3
48,154 + GFF6671 0.82 +0.1
48,154 + GFF6671 0.82 +0.1
48,154 + GFF6671 0.82 +0.2
48,154 + GFF6671 0.82 -0.5
48,154 + GFF6671 0.82 -0.2
48,154 + GFF6671 0.82 -0.1
48,154 + GFF6671 0.82 -0.7
48,154 + GFF6671 0.82 -0.4
48,154 + GFF6671 0.82 +0.5
48,154 + GFF6671 0.82 -0.5
48,154 + GFF6671 0.82 -1.0
48,154 + GFF6671 0.82 -2.1
48,155 - GFF6671 0.82 +1.2
48,155 - GFF6671 0.82 -0.0
48,155 - GFF6671 0.82 -0.1
48,155 - GFF6671 0.82 -0.8
48,155 - GFF6671 0.82 +1.5
48,155 - GFF6671 0.82 -1.0
48,155 - GFF6671 0.82 +0.5
48,155 - GFF6671 0.82 -0.5
48,155 - GFF6671 0.82 +0.2
48,155 - GFF6671 0.82 +0.2
48,155 - GFF6671 0.82 +1.5
48,155 - GFF6671 0.82 -0.1
48,155 - GFF6671 0.82 +0.9
48,155 - GFF6671 0.82 +0.3
48,155 - GFF6671 0.82 -0.7
48,155 - GFF6671 0.82 -0.5
48,155 - GFF6671 0.82 -0.5
48,155 - GFF6671 0.82 +0.3
48,336 + GFF6672 0.13 -0.8
48,336 + GFF6672 0.13 -0.6
48,336 + GFF6672 0.13 -0.7
48,336 + GFF6672 0.13 -0.9
48,336 + GFF6672 0.13 -0.3
48,336 + GFF6672 0.13 -0.4
48,336 + GFF6672 0.13 -0.4
48,336 + GFF6672 0.13 -0.3
48,336 + GFF6672 0.13 -0.4
48,336 + GFF6672 0.13 -0.1
48,337 - GFF6672 0.14 -0.6
48,337 - GFF6672 0.14 -0.1
48,337 - GFF6672 0.14 +0.9
48,337 - GFF6672 0.14 -0.9
48,337 - GFF6672 0.14 -0.6
48,337 - GFF6672 0.14 -0.3
48,337 - GFF6672 0.14 -0.1
48,337 - GFF6672 0.14 +0.5
48,337 - GFF6672 0.14 +0.4
48,337 - GFF6672 0.14 -1.9
48,337 - GFF6672 0.14 -1.1
48,337 - GFF6672 0.14 -1.4
48,337 - GFF6672 0.14 -0.5
48,584 + +0.6
48,584 + +1.3
48,584 + +0.0
48,584 + +1.5
48,585 - -0.2
48,585 - -1.4
48,585 - -0.0
48,585 - -0.5
48,670 + +1.5
48,670 + -0.3
48,670 + -1.2
48,671 - -0.1
48,671 - +0.2
48,671 - -1.1
48,671 - +0.1
48,671 - -0.1
48,756 + GFF6673 0.11 -0.4
48,757 - GFF6673 0.11 -0.2
48,757 - GFF6673 0.11 +0.8
48,757 - GFF6673 0.11 -0.3
48,770 + GFF6673 0.13 -0.5
48,771 - GFF6673 0.13 -0.7
48,965 + GFF6673 0.47 +0.5
48,965 + GFF6673 0.47 -0.1
48,965 + GFF6673 0.47 -2.2
48,965 + GFF6673 0.47 +0.5
48,965 + GFF6673 0.47 -0.3
48,965 + GFF6673 0.47 -0.2
48,965 + GFF6673 0.47 +1.7
48,965 + GFF6673 0.47 +0.2
48,965 + GFF6673 0.47 -0.0
48,965 + GFF6673 0.47 +0.5
48,965 + GFF6673 0.47 -2.0
48,965 + GFF6673 0.47 -0.1
48,965 + GFF6673 0.47 -0.5
48,965 + GFF6673 0.47 -0.7
48,965 + GFF6673 0.47 +0.5
48,966 - GFF6673 0.48 -0.5
48,966 - GFF6673 0.48 -0.7
48,966 - GFF6673 0.48 +0.8
48,966 - GFF6673 0.48 +0.3
48,966 - GFF6673 0.48 -0.2
48,966 - GFF6673 0.48 +0.0
49,106 + GFF6673 0.72 +0.6
49,106 + GFF6673 0.72 +0.1
49,106 + GFF6673 0.72 -0.9
49,106 + GFF6673 0.72 -1.5
49,106 + GFF6673 0.72 -0.4
49,107 - GFF6673 0.72 -0.9
49,107 - GFF6673 0.72 -1.0
49,107 - GFF6673 0.72 -0.3
49,107 - GFF6673 0.72 -2.3
49,107 - GFF6673 0.72 -0.8
49,107 - GFF6673 0.72 -0.5
49,107 - GFF6673 0.72 +1.0
49,118 + GFF6673 0.74 +0.1
49,118 + GFF6673 0.74 -0.8
49,118 + GFF6673 0.74 -0.1
49,208 + -0.2
49,208 + -1.0
49,208 + +0.3
49,209 - +0.2
49,209 - +0.9
49,262 + -0.7
49,262 + -0.8
49,262 + -0.3
49,263 - +0.9
49,263 - +0.3
49,307 + -1.2
49,308 - -0.5
49,369 + GFF6674 0.22 -0.1
49,369 + GFF6674 0.22 -0.3
49,369 + GFF6674 0.22 -0.6
49,369 + GFF6674 0.22 -0.3
49,370 - GFF6674 0.23 -0.6
49,370 - GFF6674 0.23 +0.0
49,370 - GFF6674 0.23 +2.1
49,408 + GFF6674 0.32 -0.4
49,408 + GFF6674 0.32 -0.4
49,408 + GFF6674 0.32 +0.1
49,408 + GFF6674 0.32 +0.3
49,408 + GFF6674 0.32 +0.0
49,408 + GFF6674 0.32 -1.3
49,408 + GFF6674 0.32 +0.2
49,409 - GFF6674 0.32 -0.1
49,409 - GFF6674 0.32 -0.6
49,409 - GFF6674 0.32 +1.3
49,409 - GFF6674 0.32 -0.2
49,409 - GFF6674 0.32 +0.2
49,409 - GFF6674 0.32 +0.0
49,409 - GFF6674 0.32 -0.3
49,409 - GFF6674 0.32 -0.9
49,409 - GFF6674 0.32 -0.2
49,409 - GFF6674 0.32 -0.1

Or see this region's nucleotide sequence