Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6638 and GFF6639 overlap by 1 nucleotides GFF6639 and GFF6640 are separated by 26 nucleotides GFF6640 and GFF6641 are separated by 12 nucleotides GFF6641 and GFF6642 are separated by 13 nucleotides
GFF6638 - no description, at 11,711 to 12,055
GFF6638
GFF6639 - no description, at 12,055 to 12,765
GFF6639
GFF6640 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 12,792 to 14,429
GFF6640
GFF6641 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 14,442 to 15,314
GFF6641
GFF6642 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 15,328 to 16,269
GFF6642
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 11.799 kb on + strand, within GFF6638 at 11.799 kb on + strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.230 kb on - strand, within GFF6639 at 12.350 kb on + strand, within GFF6639 at 12.350 kb on + strand, within GFF6639 at 12.419 kb on + strand, within GFF6639 at 12.419 kb on + strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.440 kb on + strand, within GFF6639 at 12.440 kb on + strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.483 kb on - strand, within GFF6639 at 12.483 kb on - strand, within GFF6639 at 12.847 kb on + strand at 12.848 kb on - strand at 12.848 kb on - strand at 12.848 kb on - strand at 12.848 kb on - strand at 13.145 kb on - strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.547 kb on - strand, within GFF6640 at 13.547 kb on - strand, within GFF6640 at 13.547 kb on - strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.652 kb on - strand, within GFF6640 at 13.652 kb on - strand, within GFF6640 at 13.652 kb on - strand, within GFF6640 at 13.949 kb on - strand, within GFF6640 at 13.949 kb on - strand, within GFF6640 at 14.974 kb on + strand, within GFF6641 at 14.975 kb on - strand, within GFF6641 at 15.061 kb on + strand, within GFF6641 at 15.078 kb on + strand, within GFF6641 at 15.078 kb on + strand, within GFF6641 at 15.079 kb on - strand, within GFF6641 at 15.079 kb on - strand, within GFF6641 at 15.079 kb on - strand, within GFF6641 at 15.079 kb on - strand, within GFF6641 at 15.332 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 11,799 + GFF6638 0.26 -1.0 11,799 + GFF6638 0.26 +1.7 11,800 - GFF6638 0.26 -0.8 11,800 - GFF6638 0.26 -1.3 11,800 - GFF6638 0.26 -0.7 11,800 - GFF6638 0.26 +0.7 11,800 - GFF6638 0.26 -0.6 11,800 - GFF6638 0.26 -1.3 11,800 - GFF6638 0.26 -0.5 11,800 - GFF6638 0.26 -0.6 11,800 - GFF6638 0.26 -3.0 11,802 + GFF6638 0.26 -0.8 11,802 + GFF6638 0.26 -1.2 11,802 + GFF6638 0.26 -1.7 11,802 + GFF6638 0.26 -1.1 11,802 + GFF6638 0.26 -1.0 11,802 + GFF6638 0.26 +0.5 11,802 + GFF6638 0.26 -0.5 11,802 + GFF6638 0.26 +0.1 11,802 + GFF6638 0.26 -0.6 11,802 + GFF6638 0.26 -0.7 11,802 + GFF6638 0.26 +0.5 11,802 + GFF6638 0.26 -1.0 11,802 + GFF6638 0.26 -0.3 11,802 + GFF6638 0.26 -0.7 11,802 + GFF6638 0.26 -0.4 11,802 + GFF6638 0.26 -1.0 11,802 + GFF6638 0.26 -0.2 11,802 + GFF6638 0.26 -1.1 11,803 - GFF6638 0.27 -0.5 11,803 - GFF6638 0.27 +0.8 11,803 - GFF6638 0.27 -0.9 11,803 - GFF6638 0.27 -0.7 11,803 - GFF6638 0.27 -2.3 11,803 - GFF6638 0.27 +0.7 11,803 - GFF6638 0.27 -0.3 11,803 - GFF6638 0.27 -0.5 11,803 - GFF6638 0.27 -2.3 11,803 - GFF6638 0.27 -0.6 11,803 - GFF6638 0.27 -1.6 12,033 + +0.5 12,033 + +0.6 12,033 + -2.1 12,033 + -1.8 12,033 + +1.1 12,033 + -0.5 12,033 + +0.1 12,033 + -0.5 12,033 + -0.4 12,033 + +0.2 12,033 + +0.3 12,033 + -0.6 12,033 + -1.3 12,034 - +0.1 12,034 - -0.3 12,034 - -0.4 12,034 - -1.2 12,034 - +0.5 12,034 - -2.5 12,034 - -0.8 12,034 - -0.2 12,034 - -1.3 12,034 - +0.3 12,034 - -1.0 12,034 - -1.1 12,034 - +0.5 12,034 - -0.1 12,034 - -0.5 12,034 - -0.1 12,034 - -1.6 12,230 - GFF6639 0.25 +0.2 12,350 + GFF6639 0.41 +0.1 12,350 + GFF6639 0.41 -2.0 12,419 + GFF6639 0.51 +0.3 12,419 + GFF6639 0.51 -0.2 12,420 - GFF6639 0.51 +0.4 12,420 - GFF6639 0.51 -0.8 12,420 - GFF6639 0.51 -1.5 12,420 - GFF6639 0.51 -0.8 12,420 - GFF6639 0.51 +0.2 12,420 - GFF6639 0.51 -0.5 12,420 - GFF6639 0.51 -1.8 12,440 + GFF6639 0.54 +0.2 12,440 + GFF6639 0.54 +1.9 12,441 - GFF6639 0.54 -0.6 12,441 - GFF6639 0.54 -0.3 12,441 - GFF6639 0.54 -0.6 12,441 - GFF6639 0.54 -0.5 12,441 - GFF6639 0.54 -1.0 12,483 - GFF6639 0.60 -0.3 12,483 - GFF6639 0.60 -0.3 12,847 + -1.7 12,848 - -0.8 12,848 - -0.4 12,848 - -0.3 12,848 - -2.5 13,145 - GFF6640 0.22 +0.8 13,546 + GFF6640 0.46 +0.1 13,546 + GFF6640 0.46 -0.1 13,546 + GFF6640 0.46 -0.8 13,546 + GFF6640 0.46 +0.4 13,546 + GFF6640 0.46 +0.5 13,547 - GFF6640 0.46 -0.6 13,547 - GFF6640 0.46 -0.6 13,547 - GFF6640 0.46 -0.7 13,651 + GFF6640 0.52 -1.5 13,651 + GFF6640 0.52 -0.4 13,651 + GFF6640 0.52 -1.7 13,651 + GFF6640 0.52 +0.5 13,651 + GFF6640 0.52 -0.8 13,652 - GFF6640 0.53 -1.8 13,652 - GFF6640 0.53 -1.7 13,652 - GFF6640 0.53 +1.5 13,949 - GFF6640 0.71 -1.1 13,949 - GFF6640 0.71 +0.2 14,974 + GFF6641 0.61 +0.3 14,975 - GFF6641 0.61 -1.5 15,061 + GFF6641 0.71 -0.7 15,078 + GFF6641 0.73 +0.7 15,078 + GFF6641 0.73 -0.8 15,079 - GFF6641 0.73 +0.4 15,079 - GFF6641 0.73 -0.3 15,079 - GFF6641 0.73 +0.4 15,079 - GFF6641 0.73 -0.1 15,332 + -0.5 15,359 + +0.1 15,359 + -0.3 15,359 + -0.0 15,359 + -1.1 15,359 + +0.2 15,359 + +0.8 15,359 + +0.1 15,360 - +0.2 15,360 - +1.9 15,360 - -1.0 15,360 - +0.1 15,360 - +0.9 15,360 - -0.7 15,360 - -1.5 15,360 - +0.4 15,392 + -1.2 15,392 + -1.5 15,392 + +2.5 15,392 + -0.3 15,392 + +1.5 15,392 + -0.6 15,392 + +0.8 15,392 + -1.1 15,393 - -0.7 15,393 - -0.4 15,393 - -1.1 15,393 - -0.0 15,393 - -1.0 15,393 - -2.0
Or see this region's nucleotide sequence