Strain Fitness in Variovorax sp. SCN45 around GFF6568

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
8,609	+		GFF6567	0.61	-0.5
8,610	-		GFF6567	0.61	-0.2
8,610	-		GFF6567	0.61	+0.1
9,264	+				+0.4
9,264	+				-0.5
9,264	+				-0.9
9,264	+				+0.7
9,264	+				+0.1
9,264	+				-0.1
9,264	+				-0.1
9,264	+				-0.4
9,264	+				+0.0
9,265	-				-1.0
9,265	-				-0.6
9,265	-				-1.3
9,265	-				-1.5
9,265	-				+1.4
9,276	+				+1.3
9,447	-				-0.3
9,460	+				-0.9
9,460	+				-0.7
9,460	+				-1.2
9,460	+				+0.4
9,461	-				+0.6
9,516	+				-0.1
9,516	+				+1.3
9,517	-				-0.9
9,632	+				-2.1
9,632	+				-0.2
9,633	-				-0.6
9,655	+				-0.2
9,738	+		GFF6568	0.14	-0.4
9,738	+		GFF6568	0.14	+0.7
9,738	+		GFF6568	0.14	-0.7
9,738	+		GFF6568	0.14	-1.2
9,738	+		GFF6568	0.14	-1.4
9,738	+		GFF6568	0.14	-0.4
9,738	+		GFF6568	0.14	-0.7
9,738	+		GFF6568	0.14	+0.4
9,738	+		GFF6568	0.14	-1.0
9,739	-		GFF6568	0.14	+0.6
9,739	-		GFF6568	0.14	-0.7
9,753	+		GFF6568	0.15	-0.4
9,753	+		GFF6568	0.15	-1.0
9,753	+		GFF6568	0.15	-0.2
9,753	+		GFF6568	0.15	-0.5
9,754	-		GFF6568	0.15	-0.4
9,754	-		GFF6568	0.15	-0.5
9,754	-		GFF6568	0.15	-0.3
9,754	-		GFF6568	0.15	-0.3
9,754	-		GFF6568	0.15	-0.1
9,754	-		GFF6568	0.15	+0.3
9,754	-		GFF6568	0.15	-1.3
9,754	-		GFF6568	0.15	-0.9
9,822	+		GFF6568	0.21	-0.7
9,823	-		GFF6568	0.21	-0.2
9,823	-		GFF6568	0.21	-2.2
9,823	-		GFF6568	0.21	-0.7
9,900	-		GFF6568	0.28	-0.6
10,117	+		GFF6568	0.46	-0.2
10,117	+		GFF6568	0.46	-0.0
10,117	+		GFF6568	0.46	-0.1
10,117	+		GFF6568	0.46	-0.8
10,117	+		GFF6568	0.46	-1.0
10,117	+		GFF6568	0.46	-0.2
10,117	+		GFF6568	0.46	-1.2
10,117	+		GFF6568	0.46	-0.0
10,117	+		GFF6568	0.46	+0.8
10,118	-		GFF6568	0.46	-0.1
10,118	-		GFF6568	0.46	-0.8
10,118	-		GFF6568	0.46	+1.6
10,118	-		GFF6568	0.46	-1.4
10,118	-		GFF6568	0.46	-0.7
10,118	-		GFF6568	0.46	-0.4
10,118	-		GFF6568	0.46	-0.3
10,118	-		GFF6568	0.46	-0.9
10,210	+		GFF6568	0.54	+0.5
10,211	-		GFF6568	0.54	+1.1
10,249	+		GFF6568	0.57	-0.6
10,249	+		GFF6568	0.57	-0.4
10,249	+		GFF6568	0.57	+0.3
10,249	+		GFF6568	0.57	+0.4
10,250	-		GFF6568	0.57	-0.6
10,250	-		GFF6568	0.57	-0.7
10,250	-		GFF6568	0.57	-0.0
10,368	-		GFF6568	0.67	-0.9
10,431	+		GFF6568	0.72	-1.3
10,432	-		GFF6568	0.72	-0.6
10,432	-		GFF6568	0.72	-0.3
10,511	+		GFF6568	0.79	-0.7
10,512	-		GFF6568	0.79	+0.6
10,533	+		GFF6568	0.81	-0.5
10,533	+		GFF6568	0.81	+0.4
10,533	+		GFF6568	0.81	-1.5
10,534	-		GFF6568	0.81	-2.0
10,534	-		GFF6568	0.81	-0.4
10,534	-		GFF6568	0.81	+1.6
10,538	+		GFF6568	0.81	-0.6
10,538	+		GFF6568	0.81	+0.3
10,538	+		GFF6568	0.81	-0.8
10,538	+		GFF6568	0.81	-0.9
10,538	+		GFF6568	0.81	-0.6
10,539	-		GFF6568	0.81	+0.3
10,750	+				-0.0
10,750	+				-0.0
10,750	+				-0.1
10,750	+				-0.2
10,750	+				-0.5
10,750	+				-0.2
10,750	+				-0.4
10,751	-				-0.0
10,751	-				-0.1
10,751	-				+0.1
10,751	-				+1.4
10,751	-				+0.3
10,751	-				-0.2
10,751	-				+0.9
10,751	-				+0.0
10,751	-				+0.2
10,751	-				+0.3
10,797	-				-0.2
10,827	+				+0.4
10,827	+				-0.1
10,828	-				+0.8
10,859	+				-0.0
10,859	+				+1.6
10,859	+				+0.2
10,859	+				+0.5
10,859	+				-0.4
10,859	+				-0.8
10,859	+				-0.8
10,859	+				-0.9
10,859	+				+0.1
10,860	-				-1.1
10,860	-				-0.0
10,860	-				-0.7
10,864	+				-0.7
10,864	+				+0.9
10,864	+				-0.7
10,864	+				-0.5
10,864	+				+0.0
10,864	+				-0.3
10,864	+				-0.1
10,864	+				-0.6
10,864	+				-0.3
10,864	+				-0.3
10,864	+				-0.0
10,865	-				+0.2
10,865	-				-0.4
10,865	-				-0.5
10,865	-				+0.3
10,865	-				+0.1
10,865	-				-0.6
10,865	-				+0.6
10,865	-				+0.3
10,865	-				-0.3
10,865	-				-1.1
10,868	+				-0.1
10,868	+				-0.2
10,868	+				-1.1
10,868	+				+0.2
10,869	-				-0.8
10,874	+				+0.1
10,874	+				-1.6
10,874	+				+0.3
10,874	+				-1.3
10,874	+				-0.6
10,874	+				-0.7
10,874	+				-0.1
10,874	+				+0.2
10,874	+				+0.3
10,874	+				-0.3
10,874	+				-0.0
10,874	+				+0.2
10,874	+				+0.6
10,875	-				+0.4
10,875	-				-0.0
10,875	-				-1.3
10,875	-				+0.0
10,875	-				+0.8
10,875	-				+0.2
10,875	-				+0.0
10,875	-				-0.4
10,875	-				+1.0
10,875	-				-0.2
10,875	-				-1.3
10,875	-				+0.3
10,875	-				-0.6
10,875	-				+0.9
10,875	-				+0.3
10,875	-				+0.1
10,875	-				-0.4
10,875	-				+1.0
10,875	-				-0.7
10,875	-				-1.4
10,892	-				-0.2
10,892	-				-0.2
10,892	-				+0.8
10,894	+				-1.0
10,895	-				-0.2
10,895	-				-0.7
10,911	-				+0.8
10,911	-				-0.3
10,911	-				-1.4
10,972	+				+1.0
10,972	+				-0.3
10,972	+				-0.5
10,972	+				+0.1
10,972	+				+0.9
10,973	-				-0.1
10,973	-				-0.3
10,973	-				-0.1
10,973	-				+0.3
10,978	+				-0.7
10,979	-				-0.3
10,996	+				+0.2
11,015	+				-0.3
11,062	+				-1.5
11,062	+				-0.2
11,062	+				-0.0
11,062	+				-0.6
11,062	+				-0.7
11,062	+				+0.3
11,062	+				+0.2
11,062	+				-0.0
11,062	+				-0.5
11,063	-				+0.5
11,063	-				+0.4
11,063	-				-0.7
11,063	-				-0.4
11,063	-				-0.9
11,063	-				-1.0
11,063	-				-2.6
11,063	-				+0.4
11,063	-				-0.7
11,063	-				-1.0
11,063	-				+1.9
11,063	-				-0.2
11,063	-				-0.8
11,063	-				-0.4
11,063	-				-0.3
11,063	-				-0.7
11,063	-				+0.7
11,063	-				-1.6
11,063	-				-0.6
11,063	-				+0.8
11,135	+		GFF6569	0.19	-0.4
11,135	+		GFF6569	0.19	+2.0
11,135	+		GFF6569	0.19	-0.5
11,135	+		GFF6569	0.19	-0.6
11,135	+		GFF6569	0.19	-0.5
11,135	+		GFF6569	0.19	+0.3
11,135	+		GFF6569	0.19	-0.2
11,136	-		GFF6569	0.20	-0.3
11,136	-		GFF6569	0.20	-0.5
11,136	-		GFF6569	0.20	-0.3
11,136	-		GFF6569	0.20	-0.3
11,136	-		GFF6569	0.20	+1.2
11,136	-		GFF6569	0.20	+0.2
11,198	+		GFF6569	0.31	-0.2
11,198	+		GFF6569	0.31	+1.6
11,198	+		GFF6569	0.31	-0.9
11,198	+		GFF6569	0.31	+0.6
11,198	+		GFF6569	0.31	+2.2
11,198	+		GFF6569	0.31	-0.6
11,198	+		GFF6569	0.31	-0.8
11,199	-		GFF6569	0.31	-0.1
11,199	-		GFF6569	0.31	+0.1
11,199	-		GFF6569	0.31	-1.0
11,199	-		GFF6569	0.31	-1.2
11,207	+		GFF6569	0.33	-0.5
11,207	+		GFF6569	0.33	-0.9
11,207	+		GFF6569	0.33	-0.7
11,207	+		GFF6569	0.33	+1.0
11,207	+		GFF6569	0.33	-0.3
11,207	+		GFF6569	0.33	-1.4
11,207	+		GFF6569	0.33	-0.3
11,207	+		GFF6569	0.33	-0.0
11,207	+		GFF6569	0.33	+1.1
11,207	+		GFF6569	0.33	+1.6
11,207	+		GFF6569	0.33	-0.4
11,207	+		GFF6569	0.33	+0.6
11,207	+		GFF6569	0.33	-0.3
11,207	+		GFF6569	0.33	-0.0
11,207	+		GFF6569	0.33	+1.6
11,207	+		GFF6569	0.33	+0.0
11,207	+		GFF6569	0.33	+0.7
11,208	-		GFF6569	0.33	+0.2
11,208	-		GFF6569	0.33	-0.0
11,208	-		GFF6569	0.33	+0.6
11,208	-		GFF6569	0.33	+0.2
11,208	-		GFF6569	0.33	+0.2
11,208	-		GFF6569	0.33	-0.0
11,208	-		GFF6569	0.33	+1.0
11,208	-		GFF6569	0.33	+0.4
11,208	-		GFF6569	0.33	+0.7
11,208	-		GFF6569	0.33	-0.2
11,208	-		GFF6569	0.33	-0.7
11,208	-		GFF6569	0.33	+0.2
11,208	-		GFF6569	0.33	-0.9
11,208	-		GFF6569	0.33	-0.1
11,208	-		GFF6569	0.33	-0.3
11,208	-		GFF6569	0.33	+0.2
11,208	-		GFF6569	0.33	-1.6
11,208	-		GFF6569	0.33	+0.4
11,375	+		GFF6569	0.63	+0.3
11,375	+		GFF6569	0.63	+0.4
11,376	-		GFF6569	0.64	+0.3
11,376	-		GFF6569	0.64	-0.4
11,424	+		GFF6569	0.72	+0.1
11,424	+		GFF6569	0.72	+0.7
11,506	+		GFF6569	0.87	-0.5
11,506	+		GFF6569	0.87	-0.5
11,506	+		GFF6569	0.87	-0.1
11,506	+		GFF6569	0.87	-0.5
11,507	-		GFF6569	0.88	-0.2
11,507	-		GFF6569	0.88	-0.7
11,507	-		GFF6569	0.88	+0.1
11,507	-		GFF6569	0.88	+0.6
11,507	-		GFF6569	0.88	-1.2
11,534	+				-0.1
11,534	+				+0.3
11,534	+				-0.6
11,534	+				+1.7
11,534	+				-0.3
11,534	+				-0.9
11,534	+				-1.0
11,534	+				-0.3
11,534	+				+1.3
11,534	+				-0.0
11,535	-				-1.9
11,535	-				-0.7
11,535	-				-0.0
11,535	-				-0.0
11,535	-				-0.7
11,535	-				+0.4
11,535	-				-0.9
11,535	-				-0.1
11,535	-				+0.5
11,535	-				-0.2
11,535	-				-0.2
11,629	+				-0.8
11,629	+				-0.4
11,629	+				+0.2
11,630	-				-0.3
11,630	-				+0.2
11,630	-				-1.3