Strain Fitness in Variovorax sp. SCN45 around GFF6486

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6485 and GFF6486 are separated by 28 nucleotidesGFF6486 and GFF6487 are separated by 264 nucleotidesGFF6487 and GFF6488 are separated by 76 nucleotides GFF6485 - hypothetical protein, at 63,737 to 64,711 GFF6485 GFF6486 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 64,740 to 66,041 GFF6486 GFF6487 - Gfa-like protein, at 66,306 to 66,719 GFF6487 GFF6488 - no description, at 66,796 to 66,915 GFF6488 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2 3at 64.199 kb on + strand, within GFF6485at 64.199 kb on + strand, within GFF6485at 64.199 kb on + strand, within GFF6485at 64.200 kb on - strand, within GFF6485at 64.200 kb on - strand, within GFF6485at 64.259 kb on + strand, within GFF6485at 64.359 kb on - strand, within GFF6485at 64.359 kb on - strand, within GFF6485at 64.359 kb on - strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.525 kb on - strand, within GFF6485at 64.525 kb on - strand, within GFF6485at 64.525 kb on - strand, within GFF6485at 64.649 kb on + strandat 64.649 kb on + strandat 64.649 kb on + strandat 64.650 kb on - strandat 64.650 kb on - strandat 64.650 kb on - strandat 64.650 kb on - strandat 64.650 kb on - strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.671 kb on - strandat 64.671 kb on - strandat 64.671 kb on - strandat 64.671 kb on - strandat 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.943 kb on + strand, within GFF6486at 64.944 kb on - strand, within GFF6486at 64.944 kb on - strand, within GFF6486at 64.944 kb on - strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.024 kb on - strand, within GFF6486at 65.024 kb on - strand, within GFF6486at 65.024 kb on - strand, within GFF6486at 65.551 kb on + strand, within GFF6486at 65.551 kb on + strand, within GFF6486at 65.552 kb on - strand, within GFF6486at 65.552 kb on - strand, within GFF6486at 65.552 kb on - strand, within GFF6486at 65.593 kb on + strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 66.117 kb on + strandat 66.118 kb on - strandat 66.118 kb on - strandat 66.153 kb on + strandat 66.153 kb on + strandat 66.154 kb on - strandat 66.199 kb on + strandat 66.199 kb on + strandat 66.240 kb on - strandat 66.240 kb on - strandat 66.240 kb on - strandat 66.279 kb on + strandat 66.280 kb on - strandat 66.318 kb on + strandat 66.318 kb on + strandat 66.318 kb on + strandat 66.319 kb on - strandat 66.320 kb on + strandat 66.435 kb on + strand, within GFF6487at 66.436 kb on - strand, within GFF6487at 66.436 kb on - strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.624 kb on + strand, within GFF6487at 66.624 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.812 kb on + strand, within GFF6488at 66.812 kb on + strand, within GFF6488at 66.812 kb on + strand, within GFF6488at 66.813 kb on - strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.857 kb on - strand, within GFF6488at 66.857 kb on - strand, within GFF6488at 66.870 kb on - strand, within GFF6488at 66.915 kb on + strandat 66.915 kb on + strandat 66.915 kb on + strandat 66.915 kb on + strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.973 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
64,199 + GFF6485 0.47 -0.7
64,199 + GFF6485 0.47 -0.6
64,199 + GFF6485 0.47 +1.7
64,200 - GFF6485 0.47 -0.6
64,200 - GFF6485 0.47 +0.1
64,259 + GFF6485 0.54 -0.6
64,359 - GFF6485 0.64 -1.2
64,359 - GFF6485 0.64 +0.1
64,359 - GFF6485 0.64 -0.2
64,524 + GFF6485 0.81 +0.0
64,524 + GFF6485 0.81 -1.1
64,524 + GFF6485 0.81 +0.8
64,524 + GFF6485 0.81 +0.6
64,524 + GFF6485 0.81 -0.9
64,524 + GFF6485 0.81 -1.0
64,524 + GFF6485 0.81 -0.3
64,525 - GFF6485 0.81 +0.1
64,525 - GFF6485 0.81 -0.7
64,525 - GFF6485 0.81 +0.3
64,649 + +0.7
64,649 + -0.3
64,649 + -0.2
64,650 - +0.2
64,650 - -0.7
64,650 - -1.2
64,650 - +0.3
64,650 - +0.3
64,670 + +0.0
64,670 + -0.1
64,670 + +1.1
64,670 + -0.3
64,670 + +0.3
64,670 + -1.3
64,670 + -0.4
64,670 + -0.3
64,671 - +1.4
64,671 - -0.3
64,671 - -0.2
64,671 - -0.0
64,897 + GFF6486 0.12 -0.7
64,897 + GFF6486 0.12 +0.2
64,897 + GFF6486 0.12 +0.7
64,897 + GFF6486 0.12 +1.0
64,897 + GFF6486 0.12 -1.8
64,897 + GFF6486 0.12 +0.1
64,898 - GFF6486 0.12 +1.3
64,898 - GFF6486 0.12 +0.5
64,898 - GFF6486 0.12 +0.2
64,898 - GFF6486 0.12 +0.5
64,898 - GFF6486 0.12 -1.2
64,898 - GFF6486 0.12 -0.5
64,898 - GFF6486 0.12 -0.5
64,898 - GFF6486 0.12 -0.7
64,898 - GFF6486 0.12 +0.5
64,898 - GFF6486 0.12 +0.8
64,898 - GFF6486 0.12 +0.6
64,943 + GFF6486 0.16 -0.2
64,944 - GFF6486 0.16 +0.4
64,944 - GFF6486 0.16 -0.7
64,944 - GFF6486 0.16 +0.3
65,023 + GFF6486 0.22 -1.3
65,023 + GFF6486 0.22 -0.3
65,023 + GFF6486 0.22 -0.3
65,023 + GFF6486 0.22 +0.1
65,023 + GFF6486 0.22 -0.4
65,023 + GFF6486 0.22 -0.3
65,023 + GFF6486 0.22 +1.1
65,024 - GFF6486 0.22 +0.4
65,024 - GFF6486 0.22 -0.5
65,024 - GFF6486 0.22 +0.7
65,551 + GFF6486 0.62 -1.5
65,551 + GFF6486 0.62 +0.4
65,552 - GFF6486 0.62 -0.9
65,552 - GFF6486 0.62 +0.5
65,552 - GFF6486 0.62 +1.3
65,593 + GFF6486 0.66 -0.2
65,594 - GFF6486 0.66 +1.1
65,594 - GFF6486 0.66 -0.3
65,594 - GFF6486 0.66 +1.1
65,594 - GFF6486 0.66 -0.3
65,594 - GFF6486 0.66 -0.2
65,594 - GFF6486 0.66 -0.5
65,594 - GFF6486 0.66 +0.5
66,117 + +0.3
66,118 - +2.8
66,118 - -1.9
66,153 + -0.5
66,153 + -0.8
66,154 - -0.2
66,199 + -1.9
66,199 + +0.2
66,240 - -0.3
66,240 - -0.2
66,240 - +0.1
66,279 + -0.5
66,280 - +0.7
66,318 + +0.2
66,318 + -1.9
66,318 + -0.5
66,319 - +0.1
66,320 + +2.1
66,435 + GFF6487 0.31 -0.3
66,436 - GFF6487 0.31 -0.1
66,436 - GFF6487 0.31 +0.7
66,555 + GFF6487 0.60 -0.1
66,555 + GFF6487 0.60 -0.2
66,555 + GFF6487 0.60 -0.3
66,555 + GFF6487 0.60 +0.4
66,556 - GFF6487 0.60 +0.2
66,556 - GFF6487 0.60 -0.7
66,556 - GFF6487 0.60 +0.7
66,556 - GFF6487 0.60 -0.8
66,556 - GFF6487 0.60 -1.5
66,556 - GFF6487 0.60 +0.6
66,556 - GFF6487 0.60 +0.7
66,556 - GFF6487 0.60 +0.1
66,556 - GFF6487 0.60 +0.5
66,556 - GFF6487 0.60 -0.2
66,556 - GFF6487 0.60 -0.4
66,556 - GFF6487 0.60 -0.9
66,624 + GFF6487 0.77 +0.5
66,624 + GFF6487 0.77 +0.3
66,645 + GFF6487 0.82 -0.2
66,645 + GFF6487 0.82 +1.1
66,645 + GFF6487 0.82 -0.7
66,645 + GFF6487 0.82 +0.1
66,645 + GFF6487 0.82 -0.1
66,646 - GFF6487 0.82 +1.0
66,646 - GFF6487 0.82 -1.5
66,646 - GFF6487 0.82 -0.3
66,646 - GFF6487 0.82 +0.6
66,646 - GFF6487 0.82 -0.2
66,646 - GFF6487 0.82 -0.8
66,812 + GFF6488 0.13 -0.3
66,812 + GFF6488 0.13 -1.4
66,812 + GFF6488 0.13 +2.2
66,813 - GFF6488 0.14 -2.7
66,856 + GFF6488 0.50 -0.9
66,856 + GFF6488 0.50 -0.1
66,856 + GFF6488 0.50 +0.7
66,857 - GFF6488 0.51 -0.8
66,857 - GFF6488 0.51 +0.0
66,870 - GFF6488 0.62 -1.6
66,915 + +0.0
66,915 + -0.3
66,915 + +0.3
66,915 + +0.2
66,916 - -0.3
66,916 - -0.1
66,916 - -0.8
66,916 - -0.3
66,973 + +1.3

Or see this region's nucleotide sequence