Strain Fitness in Variovorax sp. SCN45 around GFF6479

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6478 and GFF6479 are separated by 703 nucleotidesGFF6479 and GFF6480 are separated by 123 nucleotides GFF6478 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 53,751 to 56,660 GFF6478 GFF6479 - hypothetical protein, at 57,364 to 58,947 GFF6479 GFF6480 - hypothetical protein, at 59,071 to 59,982 GFF6480 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1at 56.559 kb on + strandat 56.559 kb on + strandat 56.559 kb on + strandat 56.560 kb on - strandat 56.592 kb on + strandat 56.637 kb on + strandat 56.638 kb on - strandat 56.638 kb on - strandat 56.638 kb on - strandat 56.638 kb on - strandat 56.638 kb on - strandat 56.747 kb on + strandat 56.748 kb on - strandat 57.248 kb on + strandat 57.248 kb on + strandat 57.248 kb on + strandat 57.249 kb on - strandat 57.249 kb on - strandat 57.323 kb on + strandat 57.323 kb on + strandat 57.419 kb on + strandat 57.419 kb on + strandat 57.420 kb on - strandat 57.420 kb on - strandat 57.427 kb on - strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.477 kb on - strandat 57.477 kb on - strandat 57.477 kb on - strandat 57.477 kb on - strandat 57.836 kb on + strand, within GFF6479at 57.836 kb on + strand, within GFF6479at 57.837 kb on - strand, within GFF6479at 57.837 kb on - strand, within GFF6479at 58.049 kb on + strand, within GFF6479at 58.049 kb on + strand, within GFF6479at 58.175 kb on + strand, within GFF6479at 58.175 kb on + strand, within GFF6479at 58.176 kb on - strand, within GFF6479at 58.176 kb on - strand, within GFF6479at 58.176 kb on - strand, within GFF6479at 58.367 kb on + strand, within GFF6479at 58.367 kb on + strand, within GFF6479at 58.430 kb on + strand, within GFF6479at 58.442 kb on + strand, within GFF6479at 58.443 kb on - strand, within GFF6479at 58.667 kb on + strand, within GFF6479at 58.668 kb on - strand, within GFF6479at 58.668 kb on - strand, within GFF6479at 58.668 kb on - strand, within GFF6479at 58.668 kb on - strand, within GFF6479at 58.741 kb on + strand, within GFF6479at 58.741 kb on + strand, within GFF6479at 58.741 kb on + strand, within GFF6479at 58.741 kb on + strand, within GFF6479at 58.742 kb on - strand, within GFF6479at 58.742 kb on - strand, within GFF6479at 58.742 kb on - strand, within GFF6479at 58.991 kb on + strandat 58.991 kb on + strandat 58.992 kb on - strandat 58.992 kb on - strandat 58.992 kb on - strandat 59.073 kb on - strandat 59.219 kb on + strand, within GFF6480at 59.219 kb on + strand, within GFF6480at 59.220 kb on - strand, within GFF6480at 59.220 kb on - strand, within GFF6480at 59.220 kb on - strand, within GFF6480at 59.220 kb on - strand, within GFF6480at 59.220 kb on - strand, within GFF6480at 59.220 kb on - strand, within GFF6480at 59.220 kb on - strand, within GFF6480at 59.220 kb on - strand, within GFF6480at 59.226 kb on - strand, within GFF6480at 59.351 kb on + strand, within GFF6480at 59.351 kb on + strand, within GFF6480at 59.351 kb on + strand, within GFF6480at 59.352 kb on - strand, within GFF6480at 59.378 kb on + strand, within GFF6480at 59.378 kb on + strand, within GFF6480at 59.379 kb on - strand, within GFF6480at 59.379 kb on - strand, within GFF6480at 59.379 kb on - strand, within GFF6480at 59.400 kb on - strand, within GFF6480at 59.400 kb on - strand, within GFF6480at 59.411 kb on + strand, within GFF6480at 59.412 kb on - strand, within GFF6480at 59.852 kb on + strand, within GFF6480at 59.853 kb on - strand, within GFF6480at 59.853 kb on - strand, within GFF6480at 59.853 kb on - strand, within GFF6480

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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56,559 + -1.3
56,559 + +0.1
56,559 + +1.7
56,560 - -1.0
56,592 + +0.1
56,637 + -0.1
56,638 - -0.1
56,638 - -1.6
56,638 - +0.3
56,638 - +0.8
56,638 - -0.6
56,747 + +1.1
56,748 - -0.6
57,248 + -0.8
57,248 + +0.3
57,248 + -0.3
57,249 - +0.2
57,249 - -0.1
57,323 + +1.3
57,323 + -0.7
57,419 + +0.9
57,419 + +1.3
57,420 - +0.3
57,420 - -0.4
57,427 - +0.9
57,476 + +1.7
57,476 + -0.1
57,476 + +0.0
57,476 + -0.7
57,476 + -0.6
57,476 + +0.0
57,477 - -0.3
57,477 - -1.6
57,477 - -0.2
57,477 - -0.2
57,836 + GFF6479 0.30 +1.3
57,836 + GFF6479 0.30 -0.3
57,837 - GFF6479 0.30 -0.3
57,837 - GFF6479 0.30 +0.2
58,049 + GFF6479 0.43 +0.2
58,049 + GFF6479 0.43 +0.4
58,175 + GFF6479 0.51 +0.0
58,175 + GFF6479 0.51 -0.6
58,176 - GFF6479 0.51 -0.2
58,176 - GFF6479 0.51 +0.4
58,176 - GFF6479 0.51 -0.0
58,367 + GFF6479 0.63 -0.9
58,367 + GFF6479 0.63 -2.3
58,430 + GFF6479 0.67 -0.1
58,442 + GFF6479 0.68 +1.7
58,443 - GFF6479 0.68 -0.4
58,667 + GFF6479 0.82 +0.4
58,668 - GFF6479 0.82 -0.0
58,668 - GFF6479 0.82 -0.8
58,668 - GFF6479 0.82 -0.3
58,668 - GFF6479 0.82 +0.6
58,741 + GFF6479 0.87 +0.4
58,741 + GFF6479 0.87 -0.4
58,741 + GFF6479 0.87 +1.5
58,741 + GFF6479 0.87 +0.8
58,742 - GFF6479 0.87 +1.0
58,742 - GFF6479 0.87 +0.3
58,742 - GFF6479 0.87 -0.3
58,991 + +0.3
58,991 + -0.3
58,992 - +0.0
58,992 - +0.8
58,992 - -0.2
59,073 - -0.4
59,219 + GFF6480 0.16 -0.5
59,219 + GFF6480 0.16 -0.6
59,220 - GFF6480 0.16 -1.3
59,220 - GFF6480 0.16 -0.0
59,220 - GFF6480 0.16 -0.4
59,220 - GFF6480 0.16 +0.8
59,220 - GFF6480 0.16 -0.5
59,220 - GFF6480 0.16 -0.4
59,220 - GFF6480 0.16 +0.7
59,220 - GFF6480 0.16 -0.2
59,226 - GFF6480 0.17 -0.0
59,351 + GFF6480 0.31 +1.7
59,351 + GFF6480 0.31 -0.8
59,351 + GFF6480 0.31 -0.2
59,352 - GFF6480 0.31 +0.2
59,378 + GFF6480 0.34 +1.2
59,378 + GFF6480 0.34 +1.7
59,379 - GFF6480 0.34 -1.6
59,379 - GFF6480 0.34 -0.2
59,379 - GFF6480 0.34 -2.4
59,400 - GFF6480 0.36 +1.7
59,400 - GFF6480 0.36 -1.2
59,411 + GFF6480 0.37 +0.3
59,412 - GFF6480 0.37 +1.1
59,852 + GFF6480 0.86 -0.7
59,853 - GFF6480 0.86 +0.2
59,853 - GFF6480 0.86 -0.4
59,853 - GFF6480 0.86 -0.3

Or see this region's nucleotide sequence