Strain Fitness in Variovorax sp. SCN45 around GFF6468

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6467 and GFF6468 are separated by 44 nucleotidesGFF6468 and GFF6469 overlap by 4 nucleotidesGFF6469 and GFF6470 overlap by 4 nucleotides GFF6467 - Nucleoside-diphosphate-sugar epimerases, at 44,198 to 45,217 GFF6467 GFF6468 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 45,262 to 46,230 GFF6468 GFF6469 - TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter, at 46,227 to 46,721 GFF6469 GFF6470 - TRAP-type C4-dicarboxylate transport system, large permease component, at 46,718 to 47,995 GFF6470 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1at 44.637 kb on - strand, within GFF6467at 44.670 kb on - strand, within GFF6467at 44.670 kb on - strand, within GFF6467at 44.670 kb on - strand, within GFF6467at 45.170 kb on + strandat 45.170 kb on + strandat 45.171 kb on - strandat 45.171 kb on - strandat 45.171 kb on - strandat 45.215 kb on + strandat 45.215 kb on + strandat 45.215 kb on + strandat 45.215 kb on + strandat 45.215 kb on + strandat 45.215 kb on + strandat 45.215 kb on + strandat 45.216 kb on - strandat 45.216 kb on - strandat 45.216 kb on - strandat 45.216 kb on - strandat 45.216 kb on - strandat 45.427 kb on + strand, within GFF6468at 45.428 kb on - strand, within GFF6468at 45.428 kb on - strand, within GFF6468at 45.428 kb on - strand, within GFF6468at 45.428 kb on - strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.790 kb on + strand, within GFF6468at 45.791 kb on - strand, within GFF6468at 45.791 kb on - strand, within GFF6468at 46.222 kb on + strandat 46.223 kb on - strandat 46.223 kb on - strandat 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.465 kb on - strand, within GFF6469at 46.563 kb on + strand, within GFF6469at 46.626 kb on + strand, within GFF6469at 46.626 kb on + strand, within GFF6469at 46.680 kb on + strandat 46.681 kb on - strandat 46.681 kb on - strandat 46.847 kb on + strand, within GFF6470at 46.899 kb on + strand, within GFF6470at 46.899 kb on + strand, within GFF6470at 46.899 kb on + strand, within GFF6470at 46.900 kb on - strand, within GFF6470at 46.900 kb on - strand, within GFF6470at 47.115 kb on - strand, within GFF6470at 47.134 kb on + strand, within GFF6470at 47.135 kb on - strand, within GFF6470at 47.135 kb on - strand, within GFF6470at 47.135 kb on - strand, within GFF6470at 47.183 kb on + strand, within GFF6470at 47.187 kb on - strand, within GFF6470

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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44,637 - GFF6467 0.43 -0.1
44,670 - GFF6467 0.46 -0.8
44,670 - GFF6467 0.46 -2.0
44,670 - GFF6467 0.46 +0.2
45,170 + -1.1
45,170 + -1.3
45,171 - -1.0
45,171 - +0.3
45,171 - -0.1
45,215 + -0.9
45,215 + +0.2
45,215 + -2.2
45,215 + +0.8
45,215 + -0.0
45,215 + +0.3
45,215 + +0.7
45,216 - +0.3
45,216 - +0.7
45,216 - -1.8
45,216 - -0.3
45,216 - -1.3
45,427 + GFF6468 0.17 +0.7
45,428 - GFF6468 0.17 -1.8
45,428 - GFF6468 0.17 +0.7
45,428 - GFF6468 0.17 +0.1
45,428 - GFF6468 0.17 -0.0
45,445 + GFF6468 0.19 +0.1
45,445 + GFF6468 0.19 +1.7
45,445 + GFF6468 0.19 +0.2
45,445 + GFF6468 0.19 -0.4
45,445 + GFF6468 0.19 -0.3
45,445 + GFF6468 0.19 +0.7
45,790 + GFF6468 0.54 +0.5
45,791 - GFF6468 0.55 +0.3
45,791 - GFF6468 0.55 +0.8
46,222 + -0.2
46,223 - -0.7
46,223 - -0.1
46,405 + GFF6469 0.36 +0.1
46,405 + GFF6469 0.36 -0.2
46,405 + GFF6469 0.36 -0.8
46,405 + GFF6469 0.36 +0.2
46,405 + GFF6469 0.36 -0.2
46,405 + GFF6469 0.36 -0.0
46,405 + GFF6469 0.36 -0.3
46,405 + GFF6469 0.36 +0.2
46,406 - GFF6469 0.36 -0.1
46,406 - GFF6469 0.36 -0.4
46,406 - GFF6469 0.36 -1.2
46,406 - GFF6469 0.36 -0.3
46,465 - GFF6469 0.48 -0.2
46,563 + GFF6469 0.68 +0.1
46,626 + GFF6469 0.81 -1.8
46,626 + GFF6469 0.81 -0.8
46,680 + +1.7
46,681 - -0.1
46,681 - +0.7
46,847 + GFF6470 0.10 -0.5
46,899 + GFF6470 0.14 -0.0
46,899 + GFF6470 0.14 +0.2
46,899 + GFF6470 0.14 -1.7
46,900 - GFF6470 0.14 -0.4
46,900 - GFF6470 0.14 +0.7
47,115 - GFF6470 0.31 +0.3
47,134 + GFF6470 0.33 +0.2
47,135 - GFF6470 0.33 +0.9
47,135 - GFF6470 0.33 -1.8
47,135 - GFF6470 0.33 -0.5
47,183 + GFF6470 0.36 +0.3
47,187 - GFF6470 0.37 -0.3

Or see this region's nucleotide sequence