Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6454 and GFF6455 are separated by 176 nucleotides GFF6455 and GFF6456 are separated by 7 nucleotides GFF6456 and GFF6457 are separated by 57 nucleotides GFF6457 and GFF6458 overlap by 14 nucleotides
GFF6454 - Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit, at 31,967 to 32,713
GFF6454
GFF6455 - Bll3817 protein, at 32,890 to 33,474
GFF6455
GFF6456 - Lipid A phosphoethanolamine transferase, putative, at 33,482 to 35,233
GFF6456
GFF6457 - no description, at 35,291 to 35,872
GFF6457
GFF6458 - Lipid A 4'-phosphatase LpxF-like, putative, at 35,859 to 36,563
GFF6458
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 32.529 kb on + strand, within GFF6454 at 32.529 kb on + strand, within GFF6454 at 32.529 kb on + strand, within GFF6454 at 32.541 kb on + strand, within GFF6454 at 32.541 kb on + strand, within GFF6454 at 32.542 kb on - strand, within GFF6454 at 32.542 kb on - strand, within GFF6454 at 32.542 kb on - strand, within GFF6454 at 32.542 kb on - strand, within GFF6454 at 32.697 kb on + strand at 32.698 kb on - strand at 32.719 kb on + strand at 32.720 kb on - strand at 32.720 kb on - strand at 32.720 kb on - strand at 32.720 kb on - strand at 32.787 kb on + strand at 32.787 kb on + strand at 32.787 kb on + strand at 32.787 kb on + strand at 32.787 kb on + strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.804 kb on + strand at 32.804 kb on + strand at 32.805 kb on - strand at 32.805 kb on - strand at 32.805 kb on - strand at 33.046 kb on + strand, within GFF6455 at 33.143 kb on - strand, within GFF6455 at 33.143 kb on - strand, within GFF6455 at 33.178 kb on + strand, within GFF6455 at 33.179 kb on - strand, within GFF6455 at 33.220 kb on + strand, within GFF6455 at 33.274 kb on + strand, within GFF6455 at 33.275 kb on - strand, within GFF6455 at 33.473 kb on - strand at 33.473 kb on - strand at 33.473 kb on - strand at 33.473 kb on - strand at 33.473 kb on - strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.529 kb on - strand at 33.571 kb on - strand at 33.571 kb on - strand at 33.571 kb on - strand at 33.664 kb on + strand, within GFF6456 at 33.665 kb on - strand, within GFF6456 at 33.706 kb on - strand, within GFF6456 at 33.732 kb on + strand, within GFF6456 at 33.765 kb on + strand, within GFF6456 at 33.765 kb on + strand, within GFF6456 at 33.766 kb on - strand, within GFF6456 at 33.783 kb on + strand, within GFF6456 at 33.783 kb on + strand, within GFF6456 at 33.783 kb on + strand, within GFF6456 at 33.783 kb on + strand, within GFF6456 at 33.784 kb on - strand, within GFF6456 at 33.784 kb on - strand, within GFF6456 at 33.784 kb on - strand, within GFF6456 at 33.859 kb on - strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.952 kb on - strand, within GFF6456 at 33.952 kb on - strand, within GFF6456 at 33.955 kb on - strand, within GFF6456 at 33.955 kb on - strand, within GFF6456 at 34.230 kb on + strand, within GFF6456 at 34.231 kb on - strand, within GFF6456 at 34.231 kb on - strand, within GFF6456 at 34.251 kb on + strand, within GFF6456 at 34.458 kb on + strand, within GFF6456 at 34.459 kb on - strand, within GFF6456 at 34.575 kb on + strand, within GFF6456 at 34.575 kb on + strand, within GFF6456 at 34.576 kb on - strand, within GFF6456 at 34.576 kb on - strand, within GFF6456 at 34.576 kb on - strand, within GFF6456 at 34.734 kb on + strand, within GFF6456 at 34.734 kb on + strand, within GFF6456 at 34.734 kb on + strand, within GFF6456 at 34.735 kb on - strand, within GFF6456 at 34.857 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.066 kb on + strand at 35.066 kb on + strand at 35.067 kb on - strand at 35.067 kb on - strand at 35.073 kb on + strand at 35.074 kb on - strand at 35.074 kb on - strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.192 kb on - strand at 35.192 kb on - strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.263 kb on + strand at 35.263 kb on + strand at 35.264 kb on - strand at 35.354 kb on - strand, within GFF6457 at 35.354 kb on - strand, within GFF6457 at 35.395 kb on + strand, within GFF6457 at 35.395 kb on + strand, within GFF6457 at 35.395 kb on + strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.457 kb on + strand, within GFF6457 at 35.457 kb on + strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.622 kb on + strand, within GFF6457 at 35.623 kb on - strand, within GFF6457 at 35.623 kb on - strand, within GFF6457 at 35.623 kb on - strand, within GFF6457 at 35.863 kb on + strand at 35.864 kb on - strand at 35.972 kb on + strand, within GFF6458 at 35.972 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 36.091 kb on + strand, within GFF6458 at 36.091 kb on + strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.187 kb on + strand, within GFF6458 at 36.187 kb on + strand, within GFF6458 at 36.188 kb on - strand, within GFF6458 at 36.188 kb on - strand, within GFF6458 at 36.188 kb on - strand, within GFF6458
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 32,529 + GFF6454 0.75 +0.3 32,529 + GFF6454 0.75 -0.7 32,529 + GFF6454 0.75 -1.5 32,541 + GFF6454 0.77 -0.3 32,541 + GFF6454 0.77 +0.1 32,542 - GFF6454 0.77 +0.1 32,542 - GFF6454 0.77 -1.0 32,542 - GFF6454 0.77 -0.4 32,542 - GFF6454 0.77 -0.5 32,697 + -0.3 32,698 - -0.2 32,719 + -0.1 32,720 - -1.2 32,720 - -0.5 32,720 - +0.2 32,720 - -0.7 32,787 + -0.1 32,787 + -0.1 32,787 + -0.0 32,787 + -0.3 32,787 + -0.7 32,788 - +0.7 32,788 - -1.0 32,788 - -0.7 32,788 - -0.1 32,788 - +0.1 32,788 - +0.9 32,788 - -0.7 32,804 + +0.4 32,804 + -0.0 32,805 - +0.1 32,805 - +0.2 32,805 - -0.3 33,046 + GFF6455 0.27 +0.4 33,143 - GFF6455 0.43 +0.8 33,143 - GFF6455 0.43 +0.1 33,178 + GFF6455 0.49 -0.9 33,179 - GFF6455 0.49 +0.2 33,220 + GFF6455 0.56 +0.1 33,274 + GFF6455 0.66 -0.5 33,275 - GFF6455 0.66 -1.0 33,473 - -0.1 33,473 - -0.4 33,473 - -0.5 33,473 - -0.1 33,473 - -0.1 33,528 + -0.2 33,528 + -0.2 33,528 + -0.5 33,529 - -0.8 33,571 - +0.1 33,571 - +0.7 33,571 - -0.2 33,664 + GFF6456 0.10 -0.4 33,665 - GFF6456 0.10 +0.1 33,706 - GFF6456 0.13 -0.3 33,732 + GFF6456 0.14 -0.2 33,765 + GFF6456 0.16 +0.7 33,765 + GFF6456 0.16 -0.7 33,766 - GFF6456 0.16 +0.1 33,783 + GFF6456 0.17 +0.7 33,783 + GFF6456 0.17 +0.9 33,783 + GFF6456 0.17 +0.7 33,783 + GFF6456 0.17 -0.7 33,784 - GFF6456 0.17 +0.2 33,784 - GFF6456 0.17 +0.3 33,784 - GFF6456 0.17 -0.4 33,859 - GFF6456 0.22 +0.7 33,951 + GFF6456 0.27 +0.0 33,951 + GFF6456 0.27 +0.2 33,951 + GFF6456 0.27 +0.0 33,951 + GFF6456 0.27 +1.0 33,951 + GFF6456 0.27 +0.3 33,951 + GFF6456 0.27 +1.1 33,951 + GFF6456 0.27 +0.1 33,952 - GFF6456 0.27 -0.3 33,952 - GFF6456 0.27 -0.5 33,955 - GFF6456 0.27 +1.3 33,955 - GFF6456 0.27 +1.7 34,230 + GFF6456 0.43 -0.3 34,231 - GFF6456 0.43 +0.9 34,231 - GFF6456 0.43 +0.7 34,251 + GFF6456 0.44 -0.1 34,458 + GFF6456 0.56 -0.1 34,459 - GFF6456 0.56 -0.0 34,575 + GFF6456 0.62 +0.7 34,575 + GFF6456 0.62 -0.5 34,576 - GFF6456 0.62 -0.7 34,576 - GFF6456 0.62 -0.7 34,576 - GFF6456 0.62 +0.3 34,734 + GFF6456 0.71 +0.4 34,734 + GFF6456 0.71 -1.0 34,734 + GFF6456 0.71 -0.7 34,735 - GFF6456 0.72 +0.5 34,857 + GFF6456 0.78 -0.5 34,869 + GFF6456 0.79 -0.5 34,869 + GFF6456 0.79 -0.7 34,869 + GFF6456 0.79 +1.1 34,869 + GFF6456 0.79 -0.4 34,869 + GFF6456 0.79 -0.1 34,869 + GFF6456 0.79 +0.7 34,869 + GFF6456 0.79 +0.0 34,869 + GFF6456 0.79 +0.7 34,869 + GFF6456 0.79 +1.1 34,869 + GFF6456 0.79 -0.0 34,870 - GFF6456 0.79 -0.2 34,870 - GFF6456 0.79 -0.5 34,870 - GFF6456 0.79 -0.3 34,870 - GFF6456 0.79 -0.6 34,870 - GFF6456 0.79 +0.3 34,870 - GFF6456 0.79 -0.5 34,870 - GFF6456 0.79 -0.3 34,870 - GFF6456 0.79 +0.0 34,870 - GFF6456 0.79 +0.9 34,870 - GFF6456 0.79 +1.7 34,870 - GFF6456 0.79 -0.9 34,870 - GFF6456 0.79 +1.1 35,004 + GFF6456 0.87 +0.1 35,004 + GFF6456 0.87 -1.3 35,004 + GFF6456 0.87 -0.3 35,004 + GFF6456 0.87 -0.8 35,004 + GFF6456 0.87 -0.0 35,004 + GFF6456 0.87 +0.3 35,004 + GFF6456 0.87 -0.2 35,004 + GFF6456 0.87 +0.4 35,004 + GFF6456 0.87 +1.3 35,004 + GFF6456 0.87 +0.3 35,004 + GFF6456 0.87 -0.9 35,004 + GFF6456 0.87 -0.1 35,005 - GFF6456 0.87 -1.6 35,005 - GFF6456 0.87 -0.3 35,005 - GFF6456 0.87 +0.7 35,005 - GFF6456 0.87 +0.9 35,005 - GFF6456 0.87 -0.9 35,005 - GFF6456 0.87 +0.8 35,005 - GFF6456 0.87 +0.8 35,005 - GFF6456 0.87 -0.4 35,005 - GFF6456 0.87 -1.7 35,005 - GFF6456 0.87 +1.1 35,005 - GFF6456 0.87 -0.2 35,066 + -1.3 35,066 + -1.2 35,067 - -1.5 35,067 - -0.3 35,073 + +0.2 35,074 - -0.1 35,074 - -0.6 35,191 + +1.8 35,191 + +0.1 35,191 + -0.7 35,191 + -0.9 35,191 + -0.8 35,191 + +0.4 35,192 - +0.7 35,192 - +0.7 35,239 + -0.6 35,239 + -1.7 35,239 + +0.2 35,240 - -0.1 35,240 - -0.7 35,240 - +0.1 35,240 - +0.1 35,240 - -1.0 35,240 - +0.2 35,244 + -0.3 35,244 + -0.7 35,244 + -1.3 35,244 + +0.7 35,244 + -0.6 35,244 + -0.3 35,244 + +0.3 35,244 + -0.6 35,244 + -0.3 35,244 + -0.2 35,245 - +0.1 35,245 - -0.4 35,245 - +0.8 35,245 - +0.2 35,245 - +0.2 35,245 - -0.3 35,245 - +0.1 35,245 - -0.2 35,263 + +0.0 35,263 + +0.3 35,264 - -0.3 35,354 - GFF6457 0.11 +0.7 35,354 - GFF6457 0.11 -0.6 35,395 + GFF6457 0.18 -0.2 35,395 + GFF6457 0.18 +0.3 35,395 + GFF6457 0.18 -0.1 35,396 - GFF6457 0.18 -0.9 35,396 - GFF6457 0.18 -0.4 35,396 - GFF6457 0.18 -0.4 35,396 - GFF6457 0.18 -0.0 35,457 + GFF6457 0.29 -0.6 35,457 + GFF6457 0.29 -0.2 35,458 - GFF6457 0.29 -1.1 35,458 - GFF6457 0.29 +0.1 35,458 - GFF6457 0.29 +0.1 35,458 - GFF6457 0.29 +0.1 35,622 + GFF6457 0.57 +0.4 35,623 - GFF6457 0.57 -0.1 35,623 - GFF6457 0.57 -0.9 35,623 - GFF6457 0.57 -0.7 35,863 + -1.2 35,864 - -0.4 35,972 + GFF6458 0.16 -1.3 35,972 + GFF6458 0.16 -0.1 35,983 + GFF6458 0.18 -1.9 35,983 + GFF6458 0.18 -0.1 35,983 + GFF6458 0.18 +0.7 35,983 + GFF6458 0.18 -0.3 35,983 + GFF6458 0.18 +0.7 35,983 + GFF6458 0.18 +0.2 35,983 + GFF6458 0.18 +0.5 35,983 + GFF6458 0.18 -0.9 35,984 - GFF6458 0.18 -0.3 35,984 - GFF6458 0.18 +0.7 35,984 - GFF6458 0.18 -1.3 35,984 - GFF6458 0.18 +1.3 36,091 + GFF6458 0.33 +0.8 36,091 + GFF6458 0.33 -0.0 36,092 - GFF6458 0.33 -1.2 36,092 - GFF6458 0.33 +0.2 36,092 - GFF6458 0.33 +0.1 36,092 - GFF6458 0.33 -3.1 36,092 - GFF6458 0.33 +0.3 36,103 + GFF6458 0.35 -0.2 36,103 + GFF6458 0.35 -1.5 36,103 + GFF6458 0.35 -1.4 36,103 + GFF6458 0.35 +0.3 36,103 + GFF6458 0.35 +0.1 36,104 - GFF6458 0.35 -1.0 36,104 - GFF6458 0.35 +1.1 36,104 - GFF6458 0.35 -0.4 36,104 - GFF6458 0.35 -1.2 36,104 - GFF6458 0.35 -1.0 36,187 + GFF6458 0.47 -0.3 36,187 + GFF6458 0.47 +0.1 36,188 - GFF6458 0.47 -0.1 36,188 - GFF6458 0.47 -0.6 36,188 - GFF6458 0.47 +0.2
Or see this region's nucleotide sequence