Strain Fitness in Variovorax sp. SCN45 around GFF6372

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6371 and GFF6372 are separated by 24 nucleotidesGFF6372 and GFF6373 are separated by 87 nucleotides GFF6371 - T6SS component TssC (ImpC/VipB), at 40,188 to 41,696 GFF6371 GFF6372 - T6SS component TssB (ImpB/VipA), at 41,721 to 42,293 GFF6372 GFF6373 - T6SS component TssA (ImpA), at 42,381 to 43,472 GFF6373 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 40.976 kb on - strand, within GFF6371at 41.383 kb on + strand, within GFF6371at 41.881 kb on + strand, within GFF6372at 41.881 kb on + strand, within GFF6372at 41.882 kb on - strand, within GFF6372at 42.202 kb on + strand, within GFF6372at 42.217 kb on + strand, within GFF6372at 42.294 kb on - strandat 42.429 kb on + strandat 42.597 kb on + strand, within GFF6373at 42.654 kb on - strand, within GFF6373at 42.950 kb on - strand, within GFF6373at 43.046 kb on + strand, within GFF6373

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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40,976 - GFF6371 0.52 -0.3
41,383 + GFF6371 0.79 -0.5
41,881 + GFF6372 0.28 -0.5
41,881 + GFF6372 0.28 -0.2
41,882 - GFF6372 0.28 -2.1
42,202 + GFF6372 0.84 -0.2
42,217 + GFF6372 0.87 -1.3
42,294 - -0.6
42,429 + -0.5
42,597 + GFF6373 0.20 -0.3
42,654 - GFF6373 0.25 +0.5
42,950 - GFF6373 0.52 +0.1
43,046 + GFF6373 0.61 -0.1

Or see this region's nucleotide sequence