Strain Fitness in Variovorax sp. SCN45 around GFF6273

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6270 and GFF6272 are separated by 51 nucleotidesGFF6272 and GFF6271 overlap by 2 nucleotidesGFF6271 and GFF6273 are separated by 50 nucleotidesGFF6273 and GFF6274 are separated by 65 nucleotidesGFF6274 and GFF6275 overlap by 4 nucleotidesGFF6275 and GFF6276 overlap by 11 nucleotides GFF6270 - Uncharacterized MFS-type transporter, at 62,195 to 63,646 GFF6270 GFF6272 - no description, at 63,698 to 63,832 GFF6272 GFF6271 - Phosphatidylglycerophosphatase A (EC 3.1.3.27), at 63,831 to 64,358 GFF6271 GFF6273 - Nicotinamide-nucleotide amidase (EC 3.5.1.42), at 64,409 to 64,918 GFF6273 GFF6274 - Ketosteroid isomerase-related protein, at 64,984 to 65,478 GFF6274 GFF6275 - hypothetical protein, at 65,475 to 65,795 GFF6275 GFF6276 - Uncharacterized MFS-type transporter, at 65,785 to 66,972 GFF6276 Position (kb) 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 63.459 kb on + strand, within GFF6270at 63.459 kb on + strand, within GFF6270at 63.460 kb on - strand, within GFF6270at 63.460 kb on - strand, within GFF6270at 63.685 kb on + strandat 63.685 kb on + strandat 63.685 kb on + strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.703 kb on + strandat 63.703 kb on + strandat 63.704 kb on - strandat 63.712 kb on + strand, within GFF6272at 63.712 kb on + strand, within GFF6272at 63.712 kb on + strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.724 kb on - strand, within GFF6272at 63.724 kb on - strand, within GFF6272at 63.727 kb on + strand, within GFF6272at 63.727 kb on + strand, within GFF6272at 63.727 kb on + strand, within GFF6272at 63.728 kb on - strand, within GFF6272at 64.191 kb on + strand, within GFF6271at 64.192 kb on - strand, within GFF6271at 64.356 kb on + strandat 64.356 kb on + strandat 64.356 kb on + strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.877 kb on + strandat 64.877 kb on + strandat 64.878 kb on - strandat 64.878 kb on - strandat 64.944 kb on + strandat 64.945 kb on - strandat 64.945 kb on - strandat 64.945 kb on - strandat 64.945 kb on - strandat 65.023 kb on + strandat 65.023 kb on + strandat 65.023 kb on + strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.068 kb on + strand, within GFF6274at 65.068 kb on + strand, within GFF6274at 65.068 kb on + strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.248 kb on + strand, within GFF6274at 65.248 kb on + strand, within GFF6274at 65.458 kb on + strandat 65.458 kb on + strandat 65.458 kb on + strandat 65.458 kb on + strandat 65.458 kb on + strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.529 kb on + strand, within GFF6275at 65.530 kb on - strand, within GFF6275at 65.562 kb on + strand, within GFF6275at 65.562 kb on + strand, within GFF6275at 65.562 kb on + strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.748 kb on + strand, within GFF6275at 65.749 kb on - strand, within GFF6275at 65.749 kb on - strand, within GFF6275at 65.749 kb on - strand, within GFF6275

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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63,459 + GFF6270 0.87 -0.4
63,459 + GFF6270 0.87 +0.6
63,460 - GFF6270 0.87 -0.4
63,460 - GFF6270 0.87 -1.2
63,685 + +0.4
63,685 + +1.3
63,685 + +2.0
63,686 - +0.5
63,686 - +0.4
63,686 - -0.1
63,686 - -0.0
63,686 - +0.6
63,686 - -1.1
63,703 + -0.6
63,703 + -1.3
63,704 - +1.2
63,712 + GFF6272 0.10 +0.1
63,712 + GFF6272 0.10 +0.3
63,712 + GFF6272 0.10 +0.3
63,713 - GFF6272 0.11 +0.6
63,713 - GFF6272 0.11 +1.2
63,713 - GFF6272 0.11 +0.4
63,713 - GFF6272 0.11 -0.6
63,713 - GFF6272 0.11 +1.0
63,724 - GFF6272 0.19 -0.0
63,724 - GFF6272 0.19 -0.3
63,727 + GFF6272 0.21 +0.4
63,727 + GFF6272 0.21 +0.1
63,727 + GFF6272 0.21 -0.1
63,728 - GFF6272 0.22 +0.5
64,191 + GFF6271 0.68 +0.3
64,192 - GFF6271 0.68 -1.5
64,356 + +0.1
64,356 + +2.0
64,356 + -0.2
64,357 - -0.5
64,357 - +1.0
64,357 - -1.4
64,357 - +2.0
64,357 - +1.2
64,357 - -0.4
64,589 + GFF6273 0.35 -0.9
64,589 + GFF6273 0.35 -2.4
64,589 + GFF6273 0.35 +0.3
64,589 + GFF6273 0.35 +0.2
64,589 + GFF6273 0.35 -1.2
64,589 + GFF6273 0.35 -0.0
64,590 - GFF6273 0.35 -0.6
64,590 - GFF6273 0.35 -0.6
64,590 - GFF6273 0.35 -0.4
64,590 - GFF6273 0.35 +0.5
64,590 - GFF6273 0.35 -0.6
64,590 - GFF6273 0.35 -0.7
64,877 + +0.4
64,877 + -1.2
64,878 - +0.5
64,878 - -0.6
64,944 + -0.2
64,945 - -0.2
64,945 - -0.5
64,945 - +2.0
64,945 - -0.6
65,023 + +0.2
65,023 + -1.8
65,023 + +0.0
65,024 - +0.0
65,024 - -0.6
65,024 - -0.1
65,024 - -1.2
65,024 - +0.3
65,024 - +0.2
65,024 - -0.8
65,068 + GFF6274 0.17 +0.2
65,068 + GFF6274 0.17 -0.7
65,068 + GFF6274 0.17 +1.5
65,069 - GFF6274 0.17 +0.4
65,069 - GFF6274 0.17 -0.1
65,069 - GFF6274 0.17 -0.1
65,069 - GFF6274 0.17 -0.2
65,248 + GFF6274 0.53 -0.2
65,248 + GFF6274 0.53 -0.2
65,458 + -0.1
65,458 + +1.0
65,458 + +0.0
65,458 + -0.4
65,458 + -2.3
65,459 - +0.3
65,459 - +0.4
65,459 - +0.2
65,459 - -0.6
65,459 - -0.4
65,459 - -1.4
65,459 - -0.9
65,459 - -1.0
65,459 - -0.8
65,529 + GFF6275 0.17 +1.2
65,530 - GFF6275 0.17 +0.6
65,562 + GFF6275 0.27 -0.4
65,562 + GFF6275 0.27 -1.1
65,562 + GFF6275 0.27 +0.1
65,563 - GFF6275 0.27 -0.3
65,563 - GFF6275 0.27 -1.1
65,563 - GFF6275 0.27 -0.6
65,563 - GFF6275 0.27 -0.1
65,563 - GFF6275 0.27 -0.4
65,571 + GFF6275 0.30 -1.4
65,571 + GFF6275 0.30 +1.0
65,571 + GFF6275 0.30 -0.7
65,571 + GFF6275 0.30 -0.5
65,571 + GFF6275 0.30 -0.4
65,571 + GFF6275 0.30 +0.8
65,572 - GFF6275 0.30 -1.0
65,572 - GFF6275 0.30 -0.2
65,572 - GFF6275 0.30 -0.8
65,572 - GFF6275 0.30 -0.4
65,572 - GFF6275 0.30 +1.0
65,572 - GFF6275 0.30 -0.1
65,572 - GFF6275 0.30 -1.9
65,727 + GFF6275 0.79 +0.1
65,727 + GFF6275 0.79 +2.0
65,727 + GFF6275 0.79 -0.4
65,727 + GFF6275 0.79 +0.4
65,728 - GFF6275 0.79 -0.4
65,728 - GFF6275 0.79 -0.4
65,728 - GFF6275 0.79 +0.3
65,728 - GFF6275 0.79 +0.2
65,728 - GFF6275 0.79 +0.2
65,728 - GFF6275 0.79 -0.7
65,728 - GFF6275 0.79 +0.3
65,728 - GFF6275 0.79 +0.7
65,748 + GFF6275 0.85 -0.6
65,749 - GFF6275 0.85 -1.2
65,749 - GFF6275 0.85 -1.4
65,749 - GFF6275 0.85 -0.2

Or see this region's nucleotide sequence