Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6253 and GFF6254 are separated by 55 nucleotides GFF6254 and GFF6255 are separated by 105 nucleotides
GFF6253 - Phosphonate ABC transporter substrate-binding protein PhnD (TC 3.A.1.9.1), at 46,865 to 47,815
GFF6253
GFF6254 - Phosphonate ABC transporter ATP-binding protein PhnC (TC 3.A.1.9.1), at 47,871 to 48,728
GFF6254
GFF6255 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase (EC 3.6.1.63), at 48,834 to 49,988
GFF6255
Position (kb) 47
48
49 Strain fitness (log2 ratio) -1
0
1
2 at 47.076 kb on + strand, within GFF6253 at 47.077 kb on - strand, within GFF6253 at 47.352 kb on + strand, within GFF6253 at 47.481 kb on + strand, within GFF6253 at 47.482 kb on - strand, within GFF6253 at 47.484 kb on + strand, within GFF6253 at 47.484 kb on + strand, within GFF6253 at 47.485 kb on - strand, within GFF6253 at 47.485 kb on - strand, within GFF6253 at 47.485 kb on - strand, within GFF6253 at 47.623 kb on - strand, within GFF6253 at 47.623 kb on - strand, within GFF6253 at 47.980 kb on + strand, within GFF6254 at 47.981 kb on - strand, within GFF6254 at 48.070 kb on + strand, within GFF6254 at 48.070 kb on + strand, within GFF6254 at 48.071 kb on - strand, within GFF6254 at 49.075 kb on + strand, within GFF6255 at 49.075 kb on + strand, within GFF6255 at 49.327 kb on + strand, within GFF6255 at 49.361 kb on - strand, within GFF6255 at 49.407 kb on - strand, within GFF6255 at 49.435 kb on + strand, within GFF6255 at 49.436 kb on - strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.447 kb on - strand, within GFF6255 at 49.462 kb on + strand, within GFF6255
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 47,076 + GFF6253 0.22 -0.4 47,077 - GFF6253 0.22 -0.9 47,352 + GFF6253 0.51 -1.0 47,481 + GFF6253 0.65 +0.1 47,482 - GFF6253 0.65 -0.7 47,484 + GFF6253 0.65 -0.4 47,484 + GFF6253 0.65 +0.1 47,485 - GFF6253 0.65 +1.4 47,485 - GFF6253 0.65 +0.4 47,485 - GFF6253 0.65 +0.5 47,623 - GFF6253 0.80 -0.8 47,623 - GFF6253 0.80 -1.5 47,980 + GFF6254 0.13 -0.3 47,981 - GFF6254 0.13 +0.0 48,070 + GFF6254 0.23 -0.2 48,070 + GFF6254 0.23 -0.7 48,071 - GFF6254 0.23 -1.1 49,075 + GFF6255 0.21 +0.8 49,075 + GFF6255 0.21 +0.0 49,327 + GFF6255 0.43 +0.0 49,361 - GFF6255 0.46 -0.3 49,407 - GFF6255 0.50 +0.9 49,435 + GFF6255 0.52 -1.5 49,436 - GFF6255 0.52 +1.6 49,438 + GFF6255 0.52 -0.2 49,438 + GFF6255 0.52 -0.2 49,438 + GFF6255 0.52 -0.6 49,438 + GFF6255 0.52 +0.4 49,438 + GFF6255 0.52 -0.4 49,438 + GFF6255 0.52 -0.1 49,438 + GFF6255 0.52 +0.2 49,439 - GFF6255 0.52 +1.8 49,439 - GFF6255 0.52 -0.2 49,439 - GFF6255 0.52 +0.1 49,439 - GFF6255 0.52 -0.1 49,439 - GFF6255 0.52 +0.3 49,447 - GFF6255 0.53 -1.0 49,462 + GFF6255 0.54 +0.1
Or see this region's nucleotide sequence