Strain Fitness in Variovorax sp. SCN45 around GFF6247

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6245 and GFF6246 overlap by 11 nucleotidesGFF6246 and GFF6247 are separated by 51 nucleotidesGFF6247 and GFF6248 are separated by 42 nucleotides GFF6245 - no description, at 39,534 to 39,788 GFF6245 GFF6246 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 39,778 to 40,473 GFF6246 GFF6247 - ApaG protein, at 40,525 to 40,929 GFF6247 GFF6248 - Site-specific recombinase, at 40,972 to 42,945 GFF6248 Position (kb) 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 39.762 kb on + strand, within GFF6245at 39.762 kb on + strand, within GFF6245at 39.833 kb on + strandat 39.834 kb on - strandat 39.834 kb on - strandat 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.194 kb on - strand, within GFF6246at 40.194 kb on - strand, within GFF6246at 40.194 kb on - strand, within GFF6246at 40.296 kb on - strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.473 kb on + strandat 40.474 kb on - strandat 40.522 kb on - strandat 40.557 kb on - strandat 40.557 kb on - strandat 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.621 kb on + strand, within GFF6247at 40.621 kb on + strand, within GFF6247at 40.621 kb on + strand, within GFF6247at 40.774 kb on + strand, within GFF6247at 40.775 kb on - strand, within GFF6247at 40.919 kb on + strandat 41.062 kb on - strandat 41.482 kb on + strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.705 kb on - strand, within GFF6248

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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39,762 + GFF6245 0.89 -0.6
39,762 + GFF6245 0.89 -0.5
39,833 + -1.5
39,834 - -1.2
39,834 - -0.3
40,193 + GFF6246 0.60 -1.2
40,193 + GFF6246 0.60 -1.5
40,193 + GFF6246 0.60 -0.8
40,193 + GFF6246 0.60 -0.2
40,193 + GFF6246 0.60 -2.2
40,194 - GFF6246 0.60 -0.6
40,194 - GFF6246 0.60 +2.7
40,194 - GFF6246 0.60 +0.6
40,296 - GFF6246 0.74 -0.4
40,346 + GFF6246 0.82 -1.3
40,346 + GFF6246 0.82 +0.4
40,346 + GFF6246 0.82 +0.5
40,346 + GFF6246 0.82 +1.0
40,346 + GFF6246 0.82 -0.0
40,346 + GFF6246 0.82 -1.0
40,347 - GFF6246 0.82 -0.1
40,347 - GFF6246 0.82 -1.3
40,347 - GFF6246 0.82 -1.3
40,347 - GFF6246 0.82 +0.4
40,347 - GFF6246 0.82 +0.4
40,347 - GFF6246 0.82 +1.2
40,347 - GFF6246 0.82 -1.7
40,473 + -2.0
40,474 - -0.8
40,522 - -1.5
40,557 - +0.0
40,557 - +0.2
40,609 + GFF6247 0.21 -0.0
40,609 + GFF6247 0.21 +0.2
40,609 + GFF6247 0.21 -0.5
40,609 + GFF6247 0.21 -2.4
40,609 + GFF6247 0.21 +0.4
40,609 + GFF6247 0.21 +0.0
40,609 + GFF6247 0.21 -0.9
40,609 + GFF6247 0.21 -1.0
40,609 + GFF6247 0.21 +1.6
40,610 - GFF6247 0.21 -0.3
40,610 - GFF6247 0.21 +0.4
40,610 - GFF6247 0.21 +0.0
40,610 - GFF6247 0.21 -0.0
40,610 - GFF6247 0.21 +0.4
40,610 - GFF6247 0.21 +0.1
40,610 - GFF6247 0.21 -0.0
40,610 - GFF6247 0.21 +0.4
40,621 + GFF6247 0.24 +0.4
40,621 + GFF6247 0.24 -0.1
40,621 + GFF6247 0.24 -1.4
40,774 + GFF6247 0.61 +0.5
40,775 - GFF6247 0.62 +0.1
40,919 + +0.1
41,062 - -0.5
41,482 + GFF6248 0.26 -0.8
41,483 - GFF6248 0.26 +0.7
41,483 - GFF6248 0.26 -0.0
41,483 - GFF6248 0.26 +0.2
41,483 - GFF6248 0.26 +0.2
41,483 - GFF6248 0.26 -0.4
41,704 + GFF6248 0.37 -1.1
41,704 + GFF6248 0.37 +0.2
41,704 + GFF6248 0.37 +0.4
41,704 + GFF6248 0.37 +0.6
41,704 + GFF6248 0.37 -0.0
41,704 + GFF6248 0.37 +0.6
41,705 - GFF6248 0.37 +0.5

Or see this region's nucleotide sequence