Strain Fitness in Variovorax sp. SCN45 around GFF6210

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
116,932	+				+0.9
116,932	+				+0.4
116,933	-				-0.7
116,933	-				-0.3
116,933	-				-1.1
116,933	-				-0.6
116,934	+				+0.5
116,934	+				-0.0
116,935	-				+0.6
116,940	+				-0.4
116,941	-				-0.6
116,941	-				-0.5
117,241	+		GFF6209	0.33	-3.0
117,241	+		GFF6209	0.33	-0.3
117,242	-		GFF6209	0.33	-1.1
117,242	-		GFF6209	0.33	+0.3
117,368	+		GFF6209	0.50	-1.6
117,818	+		GFF6210	0.10	+0.2
117,818	+		GFF6210	0.10	+0.9
117,819	-		GFF6210	0.10	+0.5
117,819	-		GFF6210	0.10	+0.0
117,819	-		GFF6210	0.10	-0.4
117,819	-		GFF6210	0.10	-0.7
117,819	-		GFF6210	0.10	-1.2
117,883	+		GFF6210	0.18	-0.4
117,883	+		GFF6210	0.18	-1.2
117,883	+		GFF6210	0.18	-0.4
117,883	+		GFF6210	0.18	+1.3
117,883	+		GFF6210	0.18	+0.2
117,884	-		GFF6210	0.18	+0.0
117,884	-		GFF6210	0.18	+0.7
118,013	+		GFF6210	0.35	-0.3
118,014	-		GFF6210	0.35	-0.3
118,014	-		GFF6210	0.35	-0.4
118,014	-		GFF6210	0.35	-0.8
118,100	+		GFF6210	0.46	+0.1
118,101	-		GFF6210	0.46	+0.1
118,101	-		GFF6210	0.46	+0.6
118,101	-		GFF6210	0.46	+0.6
118,101	-		GFF6210	0.46	-0.3
118,236	+		GFF6210	0.63	+0.6
118,236	+		GFF6210	0.63	-0.4
118,236	+		GFF6210	0.63	+0.4
118,236	+		GFF6210	0.63	+0.6
118,238	+		GFF6210	0.63	+0.7
118,238	+		GFF6210	0.63	+0.5
118,238	+		GFF6210	0.63	-0.1
118,238	+		GFF6210	0.63	-1.4
118,238	+		GFF6210	0.63	+0.0
118,239	-		GFF6210	0.63	-0.4
118,239	-		GFF6210	0.63	-0.1
118,239	-		GFF6210	0.63	-0.0
118,239	-		GFF6210	0.63	+0.3
118,239	-		GFF6210	0.63	+2.9
118,239	-		GFF6210	0.63	-1.4
118,239	-		GFF6210	0.63	-1.4
118,239	-		GFF6210	0.63	-0.2
118,564	+				-0.7
118,564	+				-1.1
118,564	+				-0.6
118,564	+				-0.6
118,565	-				-1.0
118,565	-				-0.6
118,565	-				-0.6
118,565	-				-0.3
118,565	-				-0.7
118,581	+				-0.4
118,581	+				+0.0
118,581	+				-1.0
118,581	+				-0.8
118,582	-				-0.3
118,582	-				+1.6
118,582	-				+0.9
118,602	+				-0.7
118,602	+				+0.3
118,602	+				-0.6
118,602	+				-1.0
118,603	-				-0.2
118,603	-				-0.4
118,603	-				-0.3
118,603	-				-0.6
118,603	-				+0.1
118,603	-				+0.1
118,641	+		GFF6211	0.12	-0.5
118,784	+		GFF6211	0.30	+0.4
118,784	+		GFF6211	0.30	+1.6
118,785	-		GFF6211	0.30	-0.9
118,785	-		GFF6211	0.30	+0.0
118,785	-		GFF6211	0.30	+0.6
118,785	-		GFF6211	0.30	+1.1
118,785	-		GFF6211	0.30	-1.0
118,878	+		GFF6211	0.42	+0.6
118,878	+		GFF6211	0.42	-1.6
118,878	+		GFF6211	0.42	+0.0
118,879	-		GFF6211	0.43	-1.1
118,879	-		GFF6211	0.43	+0.2
118,879	-		GFF6211	0.43	+0.5
118,879	-		GFF6211	0.43	-0.9
118,879	-		GFF6211	0.43	+2.1
118,975	-		GFF6211	0.55	+0.7
118,975	-		GFF6211	0.55	+0.6
118,975	-		GFF6211	0.55	-1.1
119,178	+		GFF6211	0.82	-0.4
119,178	+		GFF6211	0.82	-0.9
119,178	+		GFF6211	0.82	-0.4
119,178	+		GFF6211	0.82	-0.7
119,178	+		GFF6211	0.82	+0.4
119,178	+		GFF6211	0.82	-1.4
119,179	-		GFF6211	0.82	-0.1
119,179	-		GFF6211	0.82	+0.2
119,267	+				-0.8
119,267	+				+1.4
119,267	+				+0.1
119,267	+				-0.3
119,267	+				+0.8
119,268	-				-0.4
119,268	-				+0.2
119,268	-				-1.1
119,268	-				-0.2
119,268	-				-0.9
119,268	-				+0.3
119,268	-				+0.6
119,268	-				-0.5
119,268	-				-3.3
119,268	-				+0.2
119,526	-				-0.9