Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6204 and GFF6205 are separated by 126 nucleotides GFF6205 and GFF6206 are separated by 9 nucleotides GFF6206 and GFF6207 are separated by 14 nucleotides GFF6207 and GFF6208 are separated by 31 nucleotides
GFF6204 - Diguanylate cyclase/phosphodiesterase domain 2 (EAL), at 111,296 to 113,068
GFF6204
GFF6205 - FIG00983767: hypothetical protein, at 113,195 to 113,755
GFF6205
GFF6206 - Transcriptional regulator, GntR family, at 113,765 to 114,529
GFF6206
GFF6207 - Allantoin racemase (EC 5.1.99.3), at 114,544 to 115,281
GFF6207
GFF6208 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 115,313 to 116,806
GFF6208
Position (kb) 113
114
115 Strain fitness (log2 ratio) -2
-1
0
1 at 113.360 kb on - strand, within GFF6205 at 113.840 kb on - strand at 113.955 kb on + strand, within GFF6206 at 114.142 kb on - strand, within GFF6206 at 114.337 kb on - strand, within GFF6206 at 114.545 kb on + strand at 114.545 kb on + strand at 114.890 kb on + strand, within GFF6207 at 114.891 kb on - strand, within GFF6207 at 114.891 kb on - strand, within GFF6207 at 115.344 kb on + strand at 115.383 kb on + strand at 115.383 kb on + strand at 115.383 kb on + strand at 115.384 kb on - strand at 115.384 kb on - strand at 115.384 kb on - strand at 115.384 kb on - strand at 115.473 kb on + strand, within GFF6208 at 115.491 kb on + strand, within GFF6208 at 115.492 kb on - strand, within GFF6208 at 115.492 kb on - strand, within GFF6208 at 115.515 kb on + strand, within GFF6208 at 115.515 kb on + strand, within GFF6208 at 115.515 kb on + strand, within GFF6208 at 115.516 kb on - strand, within GFF6208
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 113,360 - GFF6205 0.29 +0.5 113,840 - +0.4 113,955 + GFF6206 0.25 -1.8 114,142 - GFF6206 0.49 -0.8 114,337 - GFF6206 0.75 -0.2 114,545 + -0.2 114,545 + +0.2 114,890 + GFF6207 0.47 -1.6 114,891 - GFF6207 0.47 +0.1 114,891 - GFF6207 0.47 -0.1 115,344 + +0.0 115,383 + +0.1 115,383 + -1.3 115,383 + +0.4 115,384 - -1.9 115,384 - +0.6 115,384 - +0.8 115,384 - -1.4 115,473 + GFF6208 0.11 -1.7 115,491 + GFF6208 0.12 -0.1 115,492 - GFF6208 0.12 +0.3 115,492 - GFF6208 0.12 -0.5 115,515 + GFF6208 0.14 -0.0 115,515 + GFF6208 0.14 -0.1 115,515 + GFF6208 0.14 +0.0 115,516 - GFF6208 0.14 -0.1
Or see this region's nucleotide sequence