Strain Fitness in Variovorax sp. SCN45 around GFF6126

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6124 and GFF6125 overlap by 4 nucleotidesGFF6125 and GFF6126 are separated by 55 nucleotidesGFF6126 and GFF6127 are separated by 59 nucleotides GFF6124 - Predicted zinc-binding protein, at 25,608 to 26,186 GFF6124 GFF6125 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 26,183 to 27,091 GFF6125 GFF6126 - putative membrane protein, at 27,147 to 28,079 GFF6126 GFF6127 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 28,139 to 29,281 GFF6127 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 26.250 kb on + strandat 26.250 kb on + strandat 26.739 kb on + strand, within GFF6125at 26.739 kb on + strand, within GFF6125at 26.739 kb on + strand, within GFF6125at 26.740 kb on - strand, within GFF6125at 26.740 kb on - strand, within GFF6125at 26.740 kb on - strand, within GFF6125at 26.740 kb on - strand, within GFF6125at 26.740 kb on - strand, within GFF6125at 26.760 kb on + strand, within GFF6125at 26.943 kb on + strand, within GFF6125at 26.973 kb on + strand, within GFF6125at 26.973 kb on + strand, within GFF6125at 26.973 kb on + strand, within GFF6125at 26.974 kb on - strand, within GFF6125at 26.974 kb on - strand, within GFF6125at 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.087 kb on + strandat 27.088 kb on - strandat 27.088 kb on - strandat 27.088 kb on - strandat 27.088 kb on - strandat 27.088 kb on - strandat 27.088 kb on - strandat 27.088 kb on - strandat 27.221 kb on + strandat 27.221 kb on + strandat 27.222 kb on - strandat 27.508 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.844 kb on + strand, within GFF6126at 27.844 kb on + strand, within GFF6126at 27.845 kb on - strand, within GFF6126at 27.845 kb on - strand, within GFF6126at 28.168 kb on - strandat 28.168 kb on - strandat 28.308 kb on + strand, within GFF6127at 28.309 kb on - strand, within GFF6127at 28.309 kb on - strand, within GFF6127at 28.464 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.488 kb on + strand, within GFF6127at 28.512 kb on + strand, within GFF6127at 28.512 kb on + strand, within GFF6127at 28.542 kb on + strand, within GFF6127at 28.542 kb on + strand, within GFF6127at 28.543 kb on - strand, within GFF6127at 28.599 kb on + strand, within GFF6127at 28.599 kb on + strand, within GFF6127at 28.689 kb on + strand, within GFF6127at 28.690 kb on - strand, within GFF6127at 28.690 kb on - strand, within GFF6127at 28.690 kb on - strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.717 kb on - strand, within GFF6127at 28.717 kb on - strand, within GFF6127at 28.717 kb on - strand, within GFF6127at 28.717 kb on - strand, within GFF6127at 28.752 kb on + strand, within GFF6127at 28.753 kb on - strand, within GFF6127at 28.869 kb on + strand, within GFF6127at 28.870 kb on - strand, within GFF6127at 28.953 kb on + strand, within GFF6127at 28.953 kb on + strand, within GFF6127at 28.954 kb on - strand, within GFF6127at 28.954 kb on - strand, within GFF6127

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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26,250 + -0.9
26,250 + -0.1
26,739 + GFF6125 0.61 +0.6
26,739 + GFF6125 0.61 -0.3
26,739 + GFF6125 0.61 +0.3
26,740 - GFF6125 0.61 -1.3
26,740 - GFF6125 0.61 -1.2
26,740 - GFF6125 0.61 -0.2
26,740 - GFF6125 0.61 -1.0
26,740 - GFF6125 0.61 +0.4
26,760 + GFF6125 0.63 -0.1
26,943 + GFF6125 0.84 -0.7
26,973 + GFF6125 0.87 -0.6
26,973 + GFF6125 0.87 -0.0
26,973 + GFF6125 0.87 -0.8
26,974 - GFF6125 0.87 +0.3
26,974 - GFF6125 0.87 +0.0
27,087 + -1.2
27,087 + -0.7
27,087 + +0.6
27,087 + -0.6
27,087 + +0.3
27,087 + +0.6
27,087 + -0.1
27,087 + -1.3
27,087 + -0.4
27,087 + -0.1
27,087 + +0.4
27,087 + +0.2
27,088 - -0.5
27,088 - +0.0
27,088 - +0.8
27,088 - +0.3
27,088 - +0.0
27,088 - -0.5
27,088 - +1.2
27,221 + -0.5
27,221 + -0.2
27,222 - -0.7
27,508 + GFF6126 0.39 -0.2
27,565 + GFF6126 0.45 +0.8
27,565 + GFF6126 0.45 +1.3
27,565 + GFF6126 0.45 -0.4
27,565 + GFF6126 0.45 -0.1
27,565 + GFF6126 0.45 +0.9
27,565 + GFF6126 0.45 +0.8
27,565 + GFF6126 0.45 -0.9
27,566 - GFF6126 0.45 +0.0
27,566 - GFF6126 0.45 +0.2
27,566 - GFF6126 0.45 -0.4
27,566 - GFF6126 0.45 +1.0
27,566 - GFF6126 0.45 +0.5
27,566 - GFF6126 0.45 -1.0
27,566 - GFF6126 0.45 +0.1
27,566 - GFF6126 0.45 -0.1
27,799 + GFF6126 0.70 -0.6
27,799 + GFF6126 0.70 -0.3
27,799 + GFF6126 0.70 +0.5
27,799 + GFF6126 0.70 -0.8
27,799 + GFF6126 0.70 -1.4
27,800 - GFF6126 0.70 -0.2
27,800 - GFF6126 0.70 -0.4
27,800 - GFF6126 0.70 +0.2
27,800 - GFF6126 0.70 +0.2
27,800 - GFF6126 0.70 -0.4
27,800 - GFF6126 0.70 +0.1
27,844 + GFF6126 0.75 -0.5
27,844 + GFF6126 0.75 -1.0
27,845 - GFF6126 0.75 +0.1
27,845 - GFF6126 0.75 +0.3
28,168 - -0.1
28,168 - +0.3
28,308 + GFF6127 0.15 -0.7
28,309 - GFF6127 0.15 -0.5
28,309 - GFF6127 0.15 -0.8
28,464 + GFF6127 0.28 +0.5
28,467 + GFF6127 0.29 -1.0
28,467 + GFF6127 0.29 -0.6
28,467 + GFF6127 0.29 -0.2
28,467 + GFF6127 0.29 -0.1
28,467 + GFF6127 0.29 +0.9
28,467 + GFF6127 0.29 -0.5
28,468 - GFF6127 0.29 +0.6
28,468 - GFF6127 0.29 -0.9
28,468 - GFF6127 0.29 -0.2
28,468 - GFF6127 0.29 +0.2
28,468 - GFF6127 0.29 -0.4
28,468 - GFF6127 0.29 +0.1
28,468 - GFF6127 0.29 -1.5
28,488 + GFF6127 0.31 +0.0
28,512 + GFF6127 0.33 +0.2
28,512 + GFF6127 0.33 -0.1
28,542 + GFF6127 0.35 -0.1
28,542 + GFF6127 0.35 -0.4
28,543 - GFF6127 0.35 -0.5
28,599 + GFF6127 0.40 -1.9
28,599 + GFF6127 0.40 -1.0
28,689 + GFF6127 0.48 -0.7
28,690 - GFF6127 0.48 -0.1
28,690 - GFF6127 0.48 +1.3
28,690 - GFF6127 0.48 -0.5
28,716 + GFF6127 0.50 -1.0
28,716 + GFF6127 0.50 -0.5
28,716 + GFF6127 0.50 +1.1
28,716 + GFF6127 0.50 +0.0
28,716 + GFF6127 0.50 -0.6
28,716 + GFF6127 0.50 -1.0
28,716 + GFF6127 0.50 +0.6
28,717 - GFF6127 0.51 +1.1
28,717 - GFF6127 0.51 +0.1
28,717 - GFF6127 0.51 +0.2
28,717 - GFF6127 0.51 -0.3
28,752 + GFF6127 0.54 -1.2
28,753 - GFF6127 0.54 -0.2
28,869 + GFF6127 0.64 -0.2
28,870 - GFF6127 0.64 +0.0
28,953 + GFF6127 0.71 +1.6
28,953 + GFF6127 0.71 -0.5
28,954 - GFF6127 0.71 +1.6
28,954 - GFF6127 0.71 -1.9

Or see this region's nucleotide sequence