Strain Fitness in Variovorax sp. SCN45 around GFF6102

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
1,162	+		GFF6101	0.29	+0.8
1,162	+		GFF6101	0.29	-0.7
1,163	-		GFF6101	0.29	-1.2
1,173	+		GFF6101	0.30	-0.5
1,279	-		GFF6101	0.40	-0.6
1,389	-		GFF6101	0.51	+0.1
1,491	+		GFF6101	0.61	-2.1
1,491	+		GFF6101	0.61	-1.2
1,833	+				-0.5
1,834	-				+0.0
1,857	-				-1.8
1,884	+				-2.7
2,183	+		GFF6102	0.21	-0.4
2,183	+		GFF6102	0.21	-0.2
2,183	+		GFF6102	0.21	-1.7
2,183	+		GFF6102	0.21	+0.1
2,184	-		GFF6102	0.21	-0.1
2,184	-		GFF6102	0.21	-0.5
2,184	-		GFF6102	0.21	-1.3
2,184	-		GFF6102	0.21	-0.5
2,187	+		GFF6102	0.21	-0.3
2,187	+		GFF6102	0.21	+0.3
2,187	+		GFF6102	0.21	-0.7
2,187	+		GFF6102	0.21	+0.0
2,188	-		GFF6102	0.21	-2.2
2,188	-		GFF6102	0.21	-0.5
2,188	-		GFF6102	0.21	-1.0
2,300	+		GFF6102	0.29	-0.0
2,300	+		GFF6102	0.29	+1.6
2,300	+		GFF6102	0.29	-2.0
2,300	+		GFF6102	0.29	+0.6
2,301	-		GFF6102	0.29	-0.5
2,301	-		GFF6102	0.29	-0.3
2,301	-		GFF6102	0.29	-0.8
2,309	+		GFF6102	0.30	-0.5
2,309	+		GFF6102	0.30	+0.2
2,309	+		GFF6102	0.30	-0.5
2,309	+		GFF6102	0.30	-1.2
2,309	+		GFF6102	0.30	-0.2
2,310	-		GFF6102	0.30	-0.4
2,310	-		GFF6102	0.30	-0.5
2,310	-		GFF6102	0.30	-0.8
2,403	-		GFF6102	0.36	-1.3
2,820	+		GFF6102	0.66	-0.1
2,992	+		GFF6102	0.79	+0.7
2,992	+		GFF6102	0.79	+0.0
2,992	+		GFF6102	0.79	-1.4
2,992	+		GFF6102	0.79	-0.3
2,992	+		GFF6102	0.79	-0.5
2,992	+		GFF6102	0.79	-0.5
2,992	+		GFF6102	0.79	-0.7
2,992	+		GFF6102	0.79	-0.4
2,992	+		GFF6102	0.79	+0.0
2,992	+		GFF6102	0.79	-0.6
2,992	+		GFF6102	0.79	-0.7
2,992	+		GFF6102	0.79	+0.2
2,992	+		GFF6102	0.79	-0.1
2,992	+		GFF6102	0.79	+0.6
2,992	+		GFF6102	0.79	-1.5
2,992	+		GFF6102	0.79	-0.7
2,992	+		GFF6102	0.79	+0.0
2,992	+		GFF6102	0.79	+0.8
2,993	-		GFF6102	0.79	-0.8
2,993	-		GFF6102	0.79	-0.2
2,993	-		GFF6102	0.79	-0.4
2,993	-		GFF6102	0.79	-1.4
2,993	-		GFF6102	0.79	-0.1
2,993	-		GFF6102	0.79	-1.0
2,993	-		GFF6102	0.79	-1.1
2,993	-		GFF6102	0.79	+0.0
2,993	-		GFF6102	0.79	-0.8
2,993	-		GFF6102	0.79	+0.1
2,993	-		GFF6102	0.79	+0.5
2,993	-		GFF6102	0.79	+1.0
2,993	-		GFF6102	0.79	-0.8
2,993	-		GFF6102	0.79	-0.3
2,993	-		GFF6102	0.79	-1.1
2,993	-		GFF6102	0.79	+0.1
2,993	-		GFF6102	0.79	-0.7
2,993	-		GFF6102	0.79	-1.0
2,993	-		GFF6102	0.79	-0.7
3,006	+		GFF6102	0.80	-0.4
3,079	-		GFF6102	0.85	-0.1
3,212	+				-0.4
3,212	+				-0.2
3,213	-				+0.7
3,213	-				+0.4
3,253	-				-0.1
3,253	-				-1.9
3,367	+				-0.5
3,368	-				+1.2
3,368	-				-0.5
3,368	-				-0.7
3,412	+				+0.4
3,413	-				-1.2
3,413	-				-0.5
3,439	+		GFF6103	0.21	-2.9
3,439	+		GFF6103	0.21	+2.0
3,440	-		GFF6103	0.22	+0.0
3,445	+		GFF6103	0.25	-1.0
3,445	+		GFF6103	0.25	+0.4
3,445	+		GFF6103	0.25	-0.4
3,446	-		GFF6103	0.26	-1.3
3,446	-		GFF6103	0.26	-0.3
3,446	-		GFF6103	0.26	+0.1
3,552	-		GFF6103	0.89	+0.0
3,552	-		GFF6103	0.89	+0.4
3,552	-		GFF6103	0.89	+0.1
3,552	-		GFF6103	0.89	-0.2
3,593	-				-1.0
3,611	+				-0.7
3,630	-				-0.6
3,638	+				+1.1
3,648	+				-1.2
3,679	+				-0.7
3,680	-				-0.6
3,680	-				-0.6
3,680	-				-0.1
3,680	-				+0.2
3,755	+				-0.5
3,765	+				+0.2
3,765	+				-0.3
3,765	+				+0.3
3,766	-				-0.9
3,784	+				+0.0
3,784	+				+0.4
3,784	+				-0.4
3,784	+				+0.7
3,784	+				-1.0
3,784	+				-0.1
3,784	+				+0.3
3,784	+				-0.1
3,784	+				-0.2
3,785	-				-0.7
3,785	-				-0.2
3,785	-				-0.6
3,785	-				+0.2
3,785	-				-0.5
3,785	-				-0.3
3,785	-				+0.6
3,785	-				-1.0
3,788	+				-0.3
3,788	+				+0.2
3,789	-				-0.1
3,789	-				-0.5
3,795	+				-0.7
3,795	+				+0.5
3,796	-				-0.9
3,845	-				-0.1
3,919	+				-0.6
3,942	+				-0.9
3,942	+				+0.3
3,942	+				-0.2
3,942	+				-0.4
3,943	-				-0.6
3,943	-				-2.5
3,996	+				+0.4
3,996	+				-1.0
3,997	-				-0.7
3,997	-				-0.1
3,997	-				-0.8
3,997	-				-0.6
4,127	+		GFF6104	0.16	-0.8
4,128	-		GFF6104	0.16	-0.4