Strain Fitness in Variovorax sp. SCN45 around GFF6101

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6099 and GFF6100 overlap by 4 nucleotidesGFF6100 and GFF6101 are separated by 91 nucleotidesGFF6101 and GFF6102 overlap by 4 nucleotides GFF6099 - Ser/Thr protein phosphatase family protein, at 2 to 319 GFF6099 GFF6100 - no description, at 316 to 768 GFF6100 GFF6101 - Ser/Thr protein phosphatase family protein, at 860 to 1,900 GFF6101 GFF6102 - hypothetical protein, at 1,897 to 3,288 GFF6102 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.115 kb on + strand, within GFF6099at 0.116 kb on - strand, within GFF6099at 0.116 kb on - strand, within GFF6099at 0.132 kb on + strand, within GFF6099at 0.133 kb on - strand, within GFF6099at 0.133 kb on - strand, within GFF6099at 0.133 kb on - strand, within GFF6099at 0.156 kb on + strand, within GFF6099at 0.157 kb on - strand, within GFF6099at 0.428 kb on + strand, within GFF6100at 0.716 kb on + strand, within GFF6100at 0.717 kb on - strand, within GFF6100at 0.717 kb on - strand, within GFF6100at 0.717 kb on - strand, within GFF6100at 0.717 kb on - strand, within GFF6100at 0.863 kb on + strandat 0.863 kb on + strandat 0.864 kb on - strandat 0.864 kb on - strandat 0.864 kb on - strandat 1.162 kb on + strand, within GFF6101at 1.162 kb on + strand, within GFF6101at 1.163 kb on - strand, within GFF6101at 1.173 kb on + strand, within GFF6101at 1.279 kb on - strand, within GFF6101at 1.389 kb on - strand, within GFF6101at 1.491 kb on + strand, within GFF6101at 1.491 kb on + strand, within GFF6101at 1.833 kb on + strandat 1.834 kb on - strandat 1.857 kb on - strandat 1.884 kb on + strandat 2.183 kb on + strand, within GFF6102at 2.183 kb on + strand, within GFF6102at 2.183 kb on + strand, within GFF6102at 2.183 kb on + strand, within GFF6102at 2.184 kb on - strand, within GFF6102at 2.184 kb on - strand, within GFF6102at 2.184 kb on - strand, within GFF6102at 2.184 kb on - strand, within GFF6102at 2.187 kb on + strand, within GFF6102at 2.187 kb on + strand, within GFF6102at 2.187 kb on + strand, within GFF6102at 2.187 kb on + strand, within GFF6102at 2.188 kb on - strand, within GFF6102at 2.188 kb on - strand, within GFF6102at 2.188 kb on - strand, within GFF6102at 2.300 kb on + strand, within GFF6102at 2.300 kb on + strand, within GFF6102at 2.300 kb on + strand, within GFF6102at 2.300 kb on + strand, within GFF6102at 2.301 kb on - strand, within GFF6102at 2.301 kb on - strand, within GFF6102at 2.301 kb on - strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.310 kb on - strand, within GFF6102at 2.310 kb on - strand, within GFF6102at 2.310 kb on - strand, within GFF6102at 2.403 kb on - strand, within GFF6102at 2.820 kb on + strand, within GFF6102

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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115 + GFF6099 0.36 -2.3
116 - GFF6099 0.36 +0.3
116 - GFF6099 0.36 -2.0
132 + GFF6099 0.41 -1.9
133 - GFF6099 0.41 -0.5
133 - GFF6099 0.41 -0.1
133 - GFF6099 0.41 +1.4
156 + GFF6099 0.48 +0.3
157 - GFF6099 0.49 +0.4
428 + GFF6100 0.25 -0.2
716 + GFF6100 0.88 +1.0
717 - GFF6100 0.89 +0.0
717 - GFF6100 0.89 -0.8
717 - GFF6100 0.89 +0.6
717 - GFF6100 0.89 +0.6
863 + -1.2
863 + -1.2
864 - -0.5
864 - +1.8
864 - -0.1
1,162 + GFF6101 0.29 +0.8
1,162 + GFF6101 0.29 -0.7
1,163 - GFF6101 0.29 -1.2
1,173 + GFF6101 0.30 -0.5
1,279 - GFF6101 0.40 -0.6
1,389 - GFF6101 0.51 +0.1
1,491 + GFF6101 0.61 -2.1
1,491 + GFF6101 0.61 -1.2
1,833 + -0.5
1,834 - +0.0
1,857 - -1.8
1,884 + -2.7
2,183 + GFF6102 0.21 -0.4
2,183 + GFF6102 0.21 -0.2
2,183 + GFF6102 0.21 -1.7
2,183 + GFF6102 0.21 +0.1
2,184 - GFF6102 0.21 -0.1
2,184 - GFF6102 0.21 -0.5
2,184 - GFF6102 0.21 -1.3
2,184 - GFF6102 0.21 -0.5
2,187 + GFF6102 0.21 -0.3
2,187 + GFF6102 0.21 +0.3
2,187 + GFF6102 0.21 -0.7
2,187 + GFF6102 0.21 +0.0
2,188 - GFF6102 0.21 -2.2
2,188 - GFF6102 0.21 -0.5
2,188 - GFF6102 0.21 -1.0
2,300 + GFF6102 0.29 -0.0
2,300 + GFF6102 0.29 +1.6
2,300 + GFF6102 0.29 -2.0
2,300 + GFF6102 0.29 +0.6
2,301 - GFF6102 0.29 -0.5
2,301 - GFF6102 0.29 -0.3
2,301 - GFF6102 0.29 -0.8
2,309 + GFF6102 0.30 -0.5
2,309 + GFF6102 0.30 +0.2
2,309 + GFF6102 0.30 -0.5
2,309 + GFF6102 0.30 -1.2
2,309 + GFF6102 0.30 -0.2
2,310 - GFF6102 0.30 -0.4
2,310 - GFF6102 0.30 -0.5
2,310 - GFF6102 0.30 -0.8
2,403 - GFF6102 0.36 -1.3
2,820 + GFF6102 0.66 -0.1

Or see this region's nucleotide sequence