Strain Fitness in Variovorax sp. SCN45 around GFF6094

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
155,536	+		GFF6093	0.31	+0.3
155,536	+		GFF6093	0.31	+1.5
155,536	+		GFF6093	0.31	-1.6
155,536	+		GFF6093	0.31	+0.3
155,537	-		GFF6093	0.31	+0.2
155,542	+		GFF6093	0.31	-1.7
155,542	+		GFF6093	0.31	-1.0
155,614	+		GFF6093	0.38	-1.3
155,615	-		GFF6093	0.38	+0.6
155,615	-		GFF6093	0.38	-0.4
155,725	+		GFF6093	0.49	-1.0
156,369	+		GFF6094	0.45	-0.9
156,369	+		GFF6094	0.45	-0.8
156,370	-		GFF6094	0.46	-0.2
156,481	-		GFF6094	0.83	-1.2
156,499	-		GFF6094	0.89	-0.9
156,499	-		GFF6094	0.89	-0.2
156,587	+				+0.2
156,588	-				-0.7
156,806	+		GFF6095	0.33	-1.2
156,807	-		GFF6095	0.34	-0.0
157,070	+		GFF6095	0.67	-0.6
157,070	+		GFF6095	0.67	-0.8
157,071	-		GFF6095	0.67	-0.4
157,071	-		GFF6095	0.67	+0.3
157,071	-		GFF6095	0.67	-0.2
157,071	-		GFF6095	0.67	-0.7
157,268	+				+0.1
157,268	+				-1.2
157,268	+				-0.2
157,268	+				-0.6
157,269	-				+0.8
157,269	-				+0.4
157,474	+		GFF6096	0.29	+0.1