Strain Fitness in Variovorax sp. SCN45 around GFF6076

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
138,553	+		GFF6075	0.63	-0.9
138,553	+		GFF6075	0.63	-0.1
138,553	+		GFF6075	0.63	-0.9
138,554	-		GFF6075	0.63	-0.2
138,554	-		GFF6075	0.63	-0.7
138,554	-		GFF6075	0.63	-0.5
138,554	-		GFF6075	0.63	-0.6
138,554	-		GFF6075	0.63	-0.6
138,554	-		GFF6075	0.63	-1.5
138,659	+		GFF6075	0.69	-1.1
138,721	+		GFF6075	0.72	+0.3
138,722	-		GFF6075	0.72	+0.1
138,722	-		GFF6075	0.72	-0.4
138,943	+		GFF6075	0.85	-1.2
138,944	-		GFF6075	0.85	-0.4
138,944	-		GFF6075	0.85	-0.4
139,452	+		GFF6076	0.30	-0.6
139,453	-		GFF6076	0.30	-0.5
139,524	+		GFF6076	0.39	-0.3
139,524	+		GFF6076	0.39	-0.9
139,524	+		GFF6076	0.39	-1.6
139,525	-		GFF6076	0.40	-0.0
139,525	-		GFF6076	0.40	+0.0
139,569	+		GFF6076	0.45	-0.6
139,569	+		GFF6076	0.45	-0.8
139,570	-		GFF6076	0.45	-1.1
139,570	-		GFF6076	0.45	-0.1
139,860	+		GFF6076	0.82	-0.2
139,860	+		GFF6076	0.82	-0.7
139,860	+		GFF6076	0.82	-1.6
139,860	+		GFF6076	0.82	-0.9
139,861	-		GFF6076	0.82	-0.5
139,861	-		GFF6076	0.82	-0.4
139,861	-		GFF6076	0.82	-0.5
139,933	-				+1.2
140,008	+				+0.2
140,009	-				-1.2
140,009	-				-0.1
140,099	+		GFF6077	0.19	+0.7
140,100	-		GFF6077	0.19	-0.1
140,100	-		GFF6077	0.19	-0.1
140,261	+		GFF6077	0.49	-0.2
140,261	+		GFF6077	0.49	-0.4
140,261	+		GFF6077	0.49	+1.6
140,261	+		GFF6077	0.49	+0.1
140,261	+		GFF6077	0.49	-2.2
140,261	+		GFF6077	0.49	+1.0
140,261	+		GFF6077	0.49	+0.5
140,261	+		GFF6077	0.49	+0.6
140,262	-		GFF6077	0.49	-1.1
140,262	-		GFF6077	0.49	-0.5
140,262	-		GFF6077	0.49	+0.4
140,262	-		GFF6077	0.49	+2.8
140,262	-		GFF6077	0.49	-0.6
140,262	-		GFF6077	0.49	-0.3
140,262	-		GFF6077	0.49	-0.4
140,262	-		GFF6077	0.49	-0.0
140,262	-		GFF6077	0.49	-0.9
140,262	-		GFF6077	0.49	+0.4
140,262	-		GFF6077	0.49	-0.2
140,262	-		GFF6077	0.49	-1.2
140,315	+		GFF6077	0.59	+0.8
140,315	+		GFF6077	0.59	-0.4
140,315	+		GFF6077	0.59	-0.3
140,316	-		GFF6077	0.59	+0.6
140,316	-		GFF6077	0.59	-1.0
140,316	-		GFF6077	0.59	-0.1
140,316	-		GFF6077	0.59	-0.6
140,396	+		GFF6077	0.74	-2.8
140,396	+		GFF6077	0.74	-0.6
140,396	+		GFF6077	0.74	-0.8
140,396	+		GFF6077	0.74	+0.3
140,396	+		GFF6077	0.74	-1.5
140,396	+		GFF6077	0.74	+0.1
140,396	+		GFF6077	0.74	-0.6
140,396	+		GFF6077	0.74	+1.5
140,396	+		GFF6077	0.74	-1.6
140,397	-		GFF6077	0.75	-0.3
140,397	-		GFF6077	0.75	-0.5
140,397	-		GFF6077	0.75	-0.0
140,397	-		GFF6077	0.75	-0.7
140,397	-		GFF6077	0.75	-1.3
140,399	+		GFF6077	0.75	+0.9
140,399	+		GFF6077	0.75	-0.1
140,399	+		GFF6077	0.75	+1.6
140,399	+		GFF6077	0.75	-1.8
140,399	+		GFF6077	0.75	-0.6
140,399	+		GFF6077	0.75	+0.3
140,399	+		GFF6077	0.75	-1.2
140,399	+		GFF6077	0.75	-0.2
140,399	+		GFF6077	0.75	-0.4
140,400	-		GFF6077	0.75	-0.6
140,400	-		GFF6077	0.75	-0.5
140,400	-		GFF6077	0.75	-0.3
140,400	-		GFF6077	0.75	+1.1
140,400	-		GFF6077	0.75	+0.9
140,400	-		GFF6077	0.75	-0.1
140,400	-		GFF6077	0.75	-0.0
140,400	-		GFF6077	0.75	-0.2
140,400	-		GFF6077	0.75	-1.7
140,400	-		GFF6077	0.75	-0.2
140,400	-		GFF6077	0.75	+0.3
140,400	-		GFF6077	0.75	+1.0
140,449	+		GFF6077	0.84	-0.5
140,450	-		GFF6077	0.84	+1.1
140,450	-		GFF6077	0.84	-1.3
140,450	-		GFF6077	0.84	+0.0
140,585	+				+1.0
140,585	+				-1.3
140,585	+				-0.1
140,585	+				+1.3
140,585	+				-0.4
140,586	-				+0.2
140,586	-				-0.4
140,586	-				-0.7
140,586	-				-0.3
140,586	-				+0.1
140,586	-				-1.0
140,675	+		GFF6078	0.13	+0.5
140,718	-		GFF6078	0.18	-0.6
140,768	+		GFF6078	0.24	-0.9
140,768	+		GFF6078	0.24	-0.2
140,768	+		GFF6078	0.24	-0.3
140,768	+		GFF6078	0.24	+1.1
140,768	+		GFF6078	0.24	-0.6
140,768	+		GFF6078	0.24	-0.4
140,768	+		GFF6078	0.24	-0.8
140,768	+		GFF6078	0.24	+0.7
140,768	+		GFF6078	0.24	-0.2
140,769	-		GFF6078	0.24	+0.8
140,769	-		GFF6078	0.24	-1.7
140,769	-		GFF6078	0.24	-0.3
140,769	-		GFF6078	0.24	+0.5
140,769	-		GFF6078	0.24	-1.2
140,769	-		GFF6078	0.24	-0.7
140,808	+		GFF6078	0.29	-0.3
140,867	+		GFF6078	0.36	-1.1