Strain Fitness in Variovorax sp. SCN45 around GFF607

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF606 and GFF607 are separated by 7 nucleotidesGFF607 and GFF608 are separated by 229 nucleotides GFF606 - BUG/TctC family periplasmic protein, at 651,471 to 652,454 GFF606 GFF607 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 652,462 to 653,445 GFF607 GFF608 - VgrG protein, at 653,675 to 656,194 GFF608 Position (kb) 652 653 654Strain fitness (log2 ratio) -2 -1 0 1 2at 651.750 kb on + strand, within GFF606at 651.801 kb on + strand, within GFF606at 651.801 kb on + strand, within GFF606at 651.801 kb on + strand, within GFF606at 651.802 kb on - strand, within GFF606at 651.802 kb on - strand, within GFF606at 651.816 kb on + strand, within GFF606at 651.816 kb on + strand, within GFF606at 651.817 kb on - strand, within GFF606at 651.892 kb on + strand, within GFF606at 651.893 kb on - strand, within GFF606at 651.893 kb on - strand, within GFF606at 651.924 kb on + strand, within GFF606at 651.955 kb on - strand, within GFF606at 651.955 kb on - strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.997 kb on - strand, within GFF606at 651.997 kb on - strand, within GFF606at 651.997 kb on - strand, within GFF606at 652.041 kb on + strand, within GFF606at 652.041 kb on + strand, within GFF606at 652.041 kb on + strand, within GFF606at 652.042 kb on - strand, within GFF606at 652.042 kb on - strand, within GFF606at 652.042 kb on - strand, within GFF606at 652.309 kb on - strand, within GFF606at 652.316 kb on - strand, within GFF606at 652.316 kb on - strand, within GFF606at 652.404 kb on + strandat 652.404 kb on + strandat 652.404 kb on + strandat 652.404 kb on + strandat 652.732 kb on + strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.797 kb on - strand, within GFF607at 653.056 kb on + strand, within GFF607at 653.056 kb on + strand, within GFF607at 653.056 kb on + strand, within GFF607at 653.057 kb on - strand, within GFF607at 653.260 kb on + strand, within GFF607at 653.582 kb on + strandat 653.582 kb on + strandat 653.583 kb on - strandat 653.608 kb on + strandat 653.770 kb on + strandat 653.900 kb on + strandat 653.900 kb on + strandat 653.900 kb on + strandat 653.900 kb on + strandat 653.901 kb on - strandat 654.044 kb on + strand, within GFF608at 654.044 kb on + strand, within GFF608at 654.045 kb on - strand, within GFF608at 654.045 kb on - strand, within GFF608at 654.059 kb on + strand, within GFF608at 654.059 kb on + strand, within GFF608at 654.059 kb on + strand, within GFF608at 654.060 kb on - strand, within GFF608at 654.060 kb on - strand, within GFF608at 654.060 kb on - strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.128 kb on + strand, within GFF608at 654.128 kb on + strand, within GFF608at 654.128 kb on + strand, within GFF608at 654.129 kb on - strand, within GFF608at 654.129 kb on - strand, within GFF608at 654.131 kb on + strand, within GFF608at 654.131 kb on + strand, within GFF608at 654.131 kb on + strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.224 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.282 kb on - strand, within GFF608at 654.335 kb on + strand, within GFF608at 654.335 kb on + strand, within GFF608at 654.336 kb on - strand, within GFF608at 654.434 kb on + strand, within GFF608at 654.434 kb on + strand, within GFF608

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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651,750 + GFF606 0.28 -0.4
651,801 + GFF606 0.34 +0.2
651,801 + GFF606 0.34 -0.0
651,801 + GFF606 0.34 -0.2
651,802 - GFF606 0.34 +0.1
651,802 - GFF606 0.34 +0.3
651,816 + GFF606 0.35 -0.2
651,816 + GFF606 0.35 -1.1
651,817 - GFF606 0.35 -0.1
651,892 + GFF606 0.43 -0.5
651,893 - GFF606 0.43 -1.8
651,893 - GFF606 0.43 -0.8
651,924 + GFF606 0.46 -0.6
651,955 - GFF606 0.49 -2.2
651,955 - GFF606 0.49 -0.2
651,996 + GFF606 0.53 -0.6
651,996 + GFF606 0.53 -0.1
651,996 + GFF606 0.53 +2.1
651,996 + GFF606 0.53 +1.0
651,996 + GFF606 0.53 +1.4
651,996 + GFF606 0.53 +0.6
651,997 - GFF606 0.53 -0.2
651,997 - GFF606 0.53 -0.1
651,997 - GFF606 0.53 -1.1
652,041 + GFF606 0.58 -1.2
652,041 + GFF606 0.58 +0.5
652,041 + GFF606 0.58 +0.4
652,042 - GFF606 0.58 -0.6
652,042 - GFF606 0.58 -0.9
652,042 - GFF606 0.58 -0.2
652,309 - GFF606 0.85 -0.9
652,316 - GFF606 0.86 -0.5
652,316 - GFF606 0.86 -0.9
652,404 + -1.1
652,404 + -0.3
652,404 + +1.1
652,404 + +0.6
652,732 + GFF607 0.27 +0.1
652,733 - GFF607 0.28 +0.1
652,733 - GFF607 0.28 -0.3
652,733 - GFF607 0.28 +0.7
652,733 - GFF607 0.28 -0.4
652,797 - GFF607 0.34 -0.9
653,056 + GFF607 0.60 +0.4
653,056 + GFF607 0.60 +1.8
653,056 + GFF607 0.60 -0.2
653,057 - GFF607 0.60 +0.1
653,260 + GFF607 0.81 +0.4
653,582 + +1.1
653,582 + +0.2
653,583 - -0.2
653,608 + -1.2
653,770 + +0.8
653,900 + -0.3
653,900 + +0.2
653,900 + +0.5
653,900 + -0.3
653,901 - +0.6
654,044 + GFF608 0.15 +0.3
654,044 + GFF608 0.15 +0.6
654,045 - GFF608 0.15 +0.7
654,045 - GFF608 0.15 -0.5
654,059 + GFF608 0.15 +0.1
654,059 + GFF608 0.15 -1.2
654,059 + GFF608 0.15 -0.7
654,060 - GFF608 0.15 -0.9
654,060 - GFF608 0.15 -0.6
654,060 - GFF608 0.15 -0.2
654,125 + GFF608 0.18 +0.2
654,125 + GFF608 0.18 -0.3
654,125 + GFF608 0.18 -0.1
654,125 + GFF608 0.18 +0.1
654,125 + GFF608 0.18 +1.0
654,126 - GFF608 0.18 +0.4
654,126 - GFF608 0.18 -1.0
654,126 - GFF608 0.18 +1.4
654,126 - GFF608 0.18 -0.1
654,126 - GFF608 0.18 +0.0
654,126 - GFF608 0.18 +0.5
654,128 + GFF608 0.18 +0.4
654,128 + GFF608 0.18 -0.9
654,128 + GFF608 0.18 +0.4
654,129 - GFF608 0.18 -0.1
654,129 - GFF608 0.18 -0.1
654,131 + GFF608 0.18 -1.4
654,131 + GFF608 0.18 +0.9
654,131 + GFF608 0.18 +0.8
654,132 - GFF608 0.18 -0.8
654,132 - GFF608 0.18 +0.9
654,132 - GFF608 0.18 +0.5
654,132 - GFF608 0.18 +0.1
654,132 - GFF608 0.18 +0.2
654,224 + GFF608 0.22 -0.5
654,281 + GFF608 0.24 -0.6
654,281 + GFF608 0.24 -0.3
654,281 + GFF608 0.24 -0.2
654,281 + GFF608 0.24 -1.0
654,281 + GFF608 0.24 +0.2
654,281 + GFF608 0.24 +0.9
654,281 + GFF608 0.24 -1.3
654,282 - GFF608 0.24 +1.0
654,335 + GFF608 0.26 -1.0
654,335 + GFF608 0.26 -1.4
654,336 - GFF608 0.26 -0.3
654,434 + GFF608 0.30 +0.4
654,434 + GFF608 0.30 -0.6

Or see this region's nucleotide sequence