Strain Fitness in Variovorax sp. SCN45 around GFF6052

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
111,753	+		GFF6051	0.17	+0.0
111,753	+		GFF6051	0.17	-0.2
111,754	-		GFF6051	0.18	-1.0
111,754	-		GFF6051	0.18	-0.5
111,754	-		GFF6051	0.18	+0.2
111,754	-		GFF6051	0.18	+2.0
111,754	-		GFF6051	0.18	-0.6
111,858	-		GFF6051	0.31	-0.3
111,858	-		GFF6051	0.31	+0.4
111,860	+		GFF6051	0.31	-0.0
111,860	+		GFF6051	0.31	-1.6
111,860	+		GFF6051	0.31	-0.0
111,861	-		GFF6051	0.31	-0.2
111,861	-		GFF6051	0.31	+0.0
111,978	+		GFF6051	0.46	-0.6
111,978	+		GFF6051	0.46	-1.0
111,978	+		GFF6051	0.46	+0.1
111,979	-		GFF6051	0.46	-0.3
111,979	-		GFF6051	0.46	+0.2
111,979	-		GFF6051	0.46	-0.8
111,979	-		GFF6051	0.46	+0.2
112,266	-		GFF6051	0.82	+0.6
112,406	+				+0.9
112,406	+				-0.4
112,406	+				+0.4
112,406	+				+0.8
112,406	+				-0.7
112,406	+				-1.2
112,406	+				-0.4
112,407	-				+0.3
112,407	-				-1.0
112,407	-				+0.4
112,407	-				-0.1
112,407	-				-0.8
112,407	-				-1.2
112,407	-				-1.0
112,407	-				-0.3
112,407	-				+1.0
112,407	-				+0.1
112,407	-				-0.9
112,517	+		GFF6052	0.20	-0.2
112,517	+		GFF6052	0.20	+0.1
112,517	+		GFF6052	0.20	+1.0
112,517	+		GFF6052	0.20	-0.3
112,517	+		GFF6052	0.20	+0.3
112,517	+		GFF6052	0.20	-0.4
112,517	+		GFF6052	0.20	-0.4
112,517	+		GFF6052	0.20	+0.7
112,517	+		GFF6052	0.20	+0.5
112,517	+		GFF6052	0.20	+1.1
112,517	+		GFF6052	0.20	+0.3
112,517	+		GFF6052	0.20	-0.6
112,518	-		GFF6052	0.20	-0.6
112,518	-		GFF6052	0.20	-0.3
112,518	-		GFF6052	0.20	+0.3
112,518	-		GFF6052	0.20	-1.0
112,518	-		GFF6052	0.20	-0.1
112,518	-		GFF6052	0.20	-0.9
112,518	-		GFF6052	0.20	-0.3
112,526	+		GFF6052	0.22	-0.6
112,526	+		GFF6052	0.22	+0.6
112,526	+		GFF6052	0.22	+1.2
112,526	+		GFF6052	0.22	+0.2
112,527	-		GFF6052	0.22	-1.6
112,587	+		GFF6052	0.32	-0.1
112,587	+		GFF6052	0.32	-0.6
112,587	+		GFF6052	0.32	+1.1
112,587	+		GFF6052	0.32	-0.1
112,587	+		GFF6052	0.32	-0.8
112,588	-		GFF6052	0.33	-0.3
112,588	-		GFF6052	0.33	+0.2
112,688	+		GFF6052	0.50	+0.5
112,688	+		GFF6052	0.50	+0.1
112,689	-		GFF6052	0.51	-0.1
112,892	+		GFF6052	0.87	-0.2
112,893	-		GFF6052	0.87	-0.8
113,056	+				-1.0
113,056	+				+0.3
113,056	+				-0.3
113,056	+				-0.0
113,056	+				-0.0
113,056	+				-0.1
113,056	+				-0.3
113,056	+				-1.2
113,056	+				-0.0
113,057	-				+0.3
113,057	-				-2.0
113,057	-				-0.1
113,057	-				+0.3
113,057	-				-1.5
113,057	-				-0.6
113,057	-				+0.1
113,057	-				-0.8
113,057	-				+0.6
113,058	+				-0.0