Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5995 and GFF5996 overlap by 4 nucleotides GFF5996 and GFF5997 are separated by 19 nucleotides GFF5997 and GFF5998 are separated by 103 nucleotides
GFF5995 - LysR family transcriptional regulator STM3121, at 54,148 to 55,083
GFF5995
GFF5996 - BUG/TctC family periplasmic protein, at 55,080 to 56,075
GFF5996
GFF5997 - hypothetical protein, at 56,095 to 56,664
GFF5997
GFF5998 - Uncharacterized protein YiiX, at 56,768 to 57,394
GFF5998
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.088 kb on + strand at 54.088 kb on + strand at 54.088 kb on + strand at 54.088 kb on + strand at 54.104 kb on + strand at 54.104 kb on + strand at 54.104 kb on + strand at 54.105 kb on - strand at 54.115 kb on - strand at 54.119 kb on + strand at 54.119 kb on + strand at 54.120 kb on - strand at 54.145 kb on + strand at 54.145 kb on + strand at 54.155 kb on + strand at 54.155 kb on + strand at 54.155 kb on + strand at 54.155 kb on + strand at 54.155 kb on + strand at 54.156 kb on - strand at 54.156 kb on - strand at 54.169 kb on + strand at 54.169 kb on + strand at 54.775 kb on + strand, within GFF5995 at 54.775 kb on + strand, within GFF5995 at 54.776 kb on - strand, within GFF5995 at 54.934 kb on + strand, within GFF5995 at 54.934 kb on + strand, within GFF5995 at 54.934 kb on + strand, within GFF5995 at 55.086 kb on - strand at 55.212 kb on + strand, within GFF5996 at 55.212 kb on + strand, within GFF5996 at 55.212 kb on + strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.426 kb on - strand, within GFF5996 at 55.737 kb on + strand, within GFF5996 at 55.737 kb on + strand, within GFF5996 at 55.737 kb on + strand, within GFF5996 at 55.738 kb on - strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.969 kb on - strand, within GFF5996 at 55.969 kb on - strand, within GFF5996 at 55.969 kb on - strand, within GFF5996 at 56.085 kb on + strand at 56.086 kb on - strand at 56.086 kb on - strand at 56.166 kb on - strand, within GFF5997 at 56.186 kb on + strand, within GFF5997 at 56.186 kb on + strand, within GFF5997 at 56.187 kb on - strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.193 kb on - strand, within GFF5997 at 56.216 kb on + strand, within GFF5997 at 56.216 kb on + strand, within GFF5997 at 56.217 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.934 kb on - strand, within GFF5998 at 57.006 kb on - strand, within GFF5998 at 57.050 kb on + strand, within GFF5998 at 57.051 kb on - strand, within GFF5998 at 57.051 kb on - strand, within GFF5998
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 54,088 + -0.1 54,088 + +0.5 54,088 + -2.7 54,088 + -0.5 54,104 + +0.4 54,104 + -0.8 54,104 + -0.3 54,105 - -1.7 54,115 - -0.5 54,119 + -0.1 54,119 + +0.1 54,120 - +0.4 54,145 + +1.1 54,145 + +0.3 54,155 + +1.0 54,155 + -0.5 54,155 + +0.3 54,155 + +1.3 54,155 + -1.0 54,156 - +0.2 54,156 - +0.6 54,169 + -1.7 54,169 + -0.7 54,775 + GFF5995 0.67 -1.3 54,775 + GFF5995 0.67 -1.3 54,776 - GFF5995 0.67 +0.4 54,934 + GFF5995 0.84 -0.7 54,934 + GFF5995 0.84 -1.8 54,934 + GFF5995 0.84 -0.2 55,086 - +1.3 55,212 + GFF5996 0.13 -0.6 55,212 + GFF5996 0.13 +0.3 55,212 + GFF5996 0.13 -0.9 55,213 - GFF5996 0.13 -0.0 55,213 - GFF5996 0.13 -0.3 55,213 - GFF5996 0.13 -0.5 55,213 - GFF5996 0.13 -0.5 55,426 - GFF5996 0.35 -0.6 55,737 + GFF5996 0.66 -0.2 55,737 + GFF5996 0.66 -0.4 55,737 + GFF5996 0.66 -0.4 55,738 - GFF5996 0.66 -0.1 55,968 + GFF5996 0.89 -0.3 55,968 + GFF5996 0.89 +0.0 55,968 + GFF5996 0.89 +0.8 55,968 + GFF5996 0.89 -0.8 55,969 - GFF5996 0.89 -0.2 55,969 - GFF5996 0.89 +0.1 55,969 - GFF5996 0.89 -0.4 56,085 + -0.5 56,086 - -1.5 56,086 - +0.1 56,166 - GFF5997 0.12 +1.1 56,186 + GFF5997 0.16 +1.9 56,186 + GFF5997 0.16 -0.7 56,187 - GFF5997 0.16 -2.2 56,192 + GFF5997 0.17 -0.5 56,192 + GFF5997 0.17 +0.5 56,192 + GFF5997 0.17 +1.0 56,192 + GFF5997 0.17 +0.2 56,192 + GFF5997 0.17 -0.7 56,193 - GFF5997 0.17 +0.2 56,216 + GFF5997 0.21 +0.4 56,216 + GFF5997 0.21 +0.1 56,217 - GFF5997 0.21 -0.8 56,511 - GFF5997 0.73 +0.4 56,511 - GFF5997 0.73 -0.1 56,511 - GFF5997 0.73 +0.4 56,934 - GFF5998 0.26 +0.3 57,006 - GFF5998 0.38 +0.5 57,050 + GFF5998 0.45 -0.2 57,051 - GFF5998 0.45 -0.9 57,051 - GFF5998 0.45 +1.2
Or see this region's nucleotide sequence