Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5852 and GFF5853 overlap by 14 nucleotides GFF5853 and GFF5854 overlap by 4 nucleotides
GFF5852 - Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC, at 30,923 to 32,179
GFF5852
GFF5853 - Type I secretion system ATPase, LssB family LapB, at 32,166 to 34,292
GFF5853
GFF5854 - Type I secretion system, outer membrane component LapE, at 34,289 to 35,713
GFF5854
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 31.174 kb on - strand, within GFF5852 at 31.182 kb on + strand, within GFF5852 at 31.183 kb on - strand, within GFF5852 at 31.189 kb on - strand, within GFF5852 at 31.189 kb on - strand, within GFF5852 at 31.189 kb on - strand, within GFF5852 at 31.476 kb on + strand, within GFF5852 at 31.476 kb on + strand, within GFF5852 at 31.479 kb on + strand, within GFF5852 at 31.735 kb on + strand, within GFF5852 at 31.736 kb on - strand, within GFF5852 at 32.866 kb on + strand, within GFF5853 at 33.736 kb on + strand, within GFF5853 at 33.736 kb on + strand, within GFF5853 at 33.737 kb on - strand, within GFF5853 at 33.737 kb on - strand, within GFF5853 at 33.737 kb on - strand, within GFF5853 at 33.871 kb on + strand, within GFF5853 at 33.871 kb on + strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 34.264 kb on + strand at 34.335 kb on + strand at 34.335 kb on + strand at 34.368 kb on + strand at 34.428 kb on + strand at 34.429 kb on - strand at 34.429 kb on - strand at 34.429 kb on - strand at 34.429 kb on - strand at 34.429 kb on - strand at 34.482 kb on + strand, within GFF5854 at 34.482 kb on + strand, within GFF5854 at 34.482 kb on + strand, within GFF5854 at 34.689 kb on + strand, within GFF5854 at 34.690 kb on - strand, within GFF5854 at 34.690 kb on - strand, within GFF5854 at 34.690 kb on - strand, within GFF5854 at 34.690 kb on - strand, within GFF5854 at 34.726 kb on - strand, within GFF5854 at 34.726 kb on - strand, within GFF5854 at 34.726 kb on - strand, within GFF5854
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 31,174 - GFF5852 0.20 -0.5 31,182 + GFF5852 0.21 -2.0 31,183 - GFF5852 0.21 -0.4 31,189 - GFF5852 0.21 -0.2 31,189 - GFF5852 0.21 -0.8 31,189 - GFF5852 0.21 -0.4 31,476 + GFF5852 0.44 -0.7 31,476 + GFF5852 0.44 -2.2 31,479 + GFF5852 0.44 +0.6 31,735 + GFF5852 0.65 +0.3 31,736 - GFF5852 0.65 -0.1 32,866 + GFF5853 0.33 -0.8 33,736 + GFF5853 0.74 +1.9 33,736 + GFF5853 0.74 -1.4 33,737 - GFF5853 0.74 -1.3 33,737 - GFF5853 0.74 -0.6 33,737 - GFF5853 0.74 +0.5 33,871 + GFF5853 0.80 +0.6 33,871 + GFF5853 0.80 -0.2 33,872 - GFF5853 0.80 +0.0 33,872 - GFF5853 0.80 -0.3 33,872 - GFF5853 0.80 -0.2 33,872 - GFF5853 0.80 -0.1 33,872 - GFF5853 0.80 +0.3 34,264 + +0.1 34,335 + +0.1 34,335 + -0.4 34,368 + +0.2 34,428 + +0.3 34,429 - -0.2 34,429 - -0.8 34,429 - +0.9 34,429 - -0.0 34,429 - -0.3 34,482 + GFF5854 0.14 +0.1 34,482 + GFF5854 0.14 +0.4 34,482 + GFF5854 0.14 -0.6 34,689 + GFF5854 0.28 +0.9 34,690 - GFF5854 0.28 -0.2 34,690 - GFF5854 0.28 -0.5 34,690 - GFF5854 0.28 -0.5 34,690 - GFF5854 0.28 +2.2 34,726 - GFF5854 0.31 -0.3 34,726 - GFF5854 0.31 -0.6 34,726 - GFF5854 0.31 -0.7
Or see this region's nucleotide sequence