Strain Fitness in Variovorax sp. SCN45 around GFF5778

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
151,809	+				-0.6
151,810	-				-1.2
151,810	-				-0.5
151,839	+				+1.6
151,839	+				+0.2
151,839	+				+0.1
151,839	+				+0.1
151,840	-				-0.4
151,840	-				+0.2
151,840	-				-1.5
151,846	+				-0.1
152,004	+		GFF5777	0.26	-1.1
152,005	-		GFF5777	0.26	-1.1
152,005	-		GFF5777	0.26	+0.0
152,037	+		GFF5777	0.30	-0.0
152,038	-		GFF5777	0.30	+0.8
152,038	-		GFF5777	0.30	-0.7
152,038	-		GFF5777	0.30	+0.1
152,038	-		GFF5777	0.30	-0.2
152,101	-		GFF5777	0.38	+0.6
152,101	-		GFF5777	0.38	+0.3
152,667	+				-1.3
152,667	+				-0.0
152,668	-				+0.4
152,668	-				+0.3
152,668	-				+0.2
152,668	-				-1.0
152,668	-				-0.6
152,770	-				+0.0
152,770	-				+1.5
152,805	+				+0.2
152,805	+				+0.6
152,806	-				-0.2
152,806	-				-0.0
152,806	-				-1.0
152,806	-				+0.6
152,955	+		GFF5778	0.24	+0.2
152,956	-		GFF5778	0.24	+1.1
152,956	-		GFF5778	0.24	-0.5
153,785	+				+1.0
153,785	+				+0.4
153,785	+				-0.4
153,786	-				+0.0
153,786	-				-0.2
153,786	-				-1.3
153,786	-				-0.1
153,832	+		GFF5779	0.13	+0.2
153,832	+		GFF5779	0.13	-0.5
153,833	-		GFF5779	0.13	+1.8
153,833	-		GFF5779	0.13	+1.8
154,039	+		GFF5779	0.32	-0.7
154,039	+		GFF5779	0.32	+0.2
154,039	+		GFF5779	0.32	-0.9
154,040	-		GFF5779	0.32	-0.7
154,040	-		GFF5779	0.32	-0.8
154,393	+		GFF5779	0.66	-0.2
154,653	+				-0.8
154,654	-				-0.3