Strain Fitness in Variovorax sp. SCN45 around GFF5772

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
144,337	-		GFF5771	0.60	+0.1
144,337	-		GFF5771	0.60	+0.4
144,513	+		GFF5771	0.69	+0.2
144,514	-		GFF5771	0.69	+1.1
144,514	-		GFF5771	0.69	+0.2
144,520	-		GFF5771	0.69	-0.2
144,571	+		GFF5771	0.72	-0.8
144,571	+		GFF5771	0.72	+0.8
145,734	-		GFF5772	0.22	-0.8
145,751	+		GFF5772	0.23	-0.2
145,751	+		GFF5772	0.23	+0.7
145,752	-		GFF5772	0.23	-1.5
145,752	-		GFF5772	0.23	+0.8
145,752	-		GFF5772	0.23	+0.4
145,752	-		GFF5772	0.23	+0.6
145,826	+		GFF5772	0.26	+0.8
145,940	+		GFF5772	0.31	-1.5
145,941	-		GFF5772	0.31	+0.2
145,956	-		GFF5772	0.31	+0.1
145,973	+		GFF5772	0.32	-0.2
145,973	+		GFF5772	0.32	+0.6
145,973	+		GFF5772	0.32	+1.2
145,974	-		GFF5772	0.32	+0.9
145,974	-		GFF5772	0.32	-0.4
145,992	+		GFF5772	0.33	-0.9
145,992	+		GFF5772	0.33	+0.1
146,000	+		GFF5772	0.33	+0.7
146,001	-		GFF5772	0.33	-0.1
146,321	+		GFF5772	0.46	+0.4
146,321	+		GFF5772	0.46	-0.0
146,321	+		GFF5772	0.46	+0.5
146,321	+		GFF5772	0.46	-1.3
146,321	+		GFF5772	0.46	+0.0
146,322	-		GFF5772	0.46	-1.1
146,322	-		GFF5772	0.46	-0.3
146,322	-		GFF5772	0.46	+1.2
146,322	-		GFF5772	0.46	-0.6
146,322	-		GFF5772	0.46	-0.9
146,322	-		GFF5772	0.46	-0.8
146,322	-		GFF5772	0.46	+0.5
146,789	+		GFF5772	0.64	+0.1
147,299	+		GFF5772	0.84	-0.8
147,299	+		GFF5772	0.84	-0.8
147,300	-		GFF5772	0.84	+0.2
147,300	-		GFF5772	0.84	+1.0
147,300	-		GFF5772	0.84	+0.2
148,216	-		GFF5773	0.61	+0.2