Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5757 and GFF5758 overlap by 4 nucleotides GFF5758 and GFF5759 are separated by 306 nucleotides GFF5759 and GFF5760 overlap by 4 nucleotides GFF5760 and GFF5761 are separated by 66 nucleotides
GFF5757 - hypothetical protein, at 129,710 to 131,014
GFF5757
GFF5758 - Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB, at 131,011 to 131,310
GFF5758
GFF5759 - Flagellar transcriptional activator FlhD, at 131,617 to 132,021
GFF5759
GFF5760 - Flagellar transcriptional activator FlhC, at 132,018 to 132,605
GFF5760
GFF5761 - Flagellar motor rotation protein MotA, at 132,672 to 133,532
GFF5761
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.056 kb on + strand, within GFF5758 at 131.056 kb on + strand, within GFF5758 at 131.057 kb on - strand, within GFF5758 at 131.057 kb on - strand, within GFF5758 at 131.057 kb on - strand, within GFF5758 at 131.098 kb on + strand, within GFF5758 at 131.098 kb on + strand, within GFF5758 at 131.098 kb on + strand, within GFF5758 at 131.099 kb on - strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.308 kb on + strand at 131.308 kb on + strand at 131.308 kb on + strand at 131.308 kb on + strand at 131.308 kb on + strand at 131.308 kb on + strand at 131.309 kb on - strand at 131.313 kb on + strand at 131.314 kb on - strand at 131.314 kb on - strand at 131.323 kb on + strand at 131.324 kb on - strand at 131.331 kb on + strand at 131.333 kb on + strand at 131.334 kb on - strand at 131.335 kb on + strand at 131.335 kb on + strand at 131.335 kb on + strand at 131.336 kb on - strand at 131.336 kb on - strand at 131.336 kb on - strand at 131.370 kb on - strand at 131.370 kb on - strand at 131.412 kb on - strand at 131.493 kb on + strand at 131.493 kb on + strand at 131.493 kb on + strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.553 kb on - strand at 131.553 kb on - strand at 131.559 kb on + strand at 131.560 kb on - strand at 131.588 kb on - strand at 131.593 kb on - strand at 131.703 kb on + strand, within GFF5759 at 131.703 kb on + strand, within GFF5759 at 131.713 kb on + strand, within GFF5759 at 131.713 kb on + strand, within GFF5759 at 131.713 kb on + strand, within GFF5759 at 131.713 kb on + strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.148 kb on - strand, within GFF5760 at 132.148 kb on - strand, within GFF5760 at 132.148 kb on - strand, within GFF5760 at 132.148 kb on - strand, within GFF5760 at 132.197 kb on + strand, within GFF5760 at 132.197 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.208 kb on - strand, within GFF5760 at 132.208 kb on - strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.255 kb on + strand, within GFF5760 at 132.255 kb on + strand, within GFF5760 at 132.256 kb on - strand, within GFF5760 at 132.256 kb on - strand, within GFF5760 at 132.256 kb on - strand, within GFF5760 at 132.256 kb on - strand, within GFF5760 at 132.321 kb on + strand, within GFF5760 at 132.321 kb on + strand, within GFF5760 at 132.321 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.603 kb on + strand at 132.603 kb on + strand at 132.603 kb on + strand at 132.603 kb on + strand at 132.604 kb on - strand at 132.604 kb on - strand at 132.607 kb on + strand at 132.607 kb on + strand at 132.608 kb on - strand at 132.608 kb on - strand at 132.608 kb on - strand at 132.688 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.691 kb on - strand at 132.691 kb on - strand at 132.691 kb on - strand at 132.691 kb on - strand at 132.723 kb on + strand at 132.723 kb on + strand at 132.724 kb on - strand at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.895 kb on - strand, within GFF5761 at 132.895 kb on - strand, within GFF5761 at 132.918 kb on + strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 132.919 kb on - strand, within GFF5761
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 131,006 + -0.1 131,006 + -0.5 131,006 + -0.3 131,006 + +1.4 131,006 + -0.8 131,006 + +1.0 131,006 + -0.5 131,006 + +1.2 131,006 + -0.4 131,006 + -0.0 131,006 + -0.2 131,006 + +0.2 131,006 + -1.8 131,006 + -0.5 131,007 - -1.1 131,007 - -0.9 131,007 - -0.3 131,007 - -0.2 131,007 - +0.1 131,007 - +0.8 131,056 + GFF5758 0.15 -0.8 131,056 + GFF5758 0.15 -0.3 131,057 - GFF5758 0.15 +1.4 131,057 - GFF5758 0.15 -0.6 131,057 - GFF5758 0.15 +0.3 131,098 + GFF5758 0.29 -1.1 131,098 + GFF5758 0.29 +0.0 131,098 + GFF5758 0.29 +0.6 131,099 - GFF5758 0.29 +0.0 131,149 + GFF5758 0.46 +1.3 131,149 + GFF5758 0.46 +0.2 131,149 + GFF5758 0.46 +0.5 131,149 + GFF5758 0.46 -0.1 131,149 + GFF5758 0.46 -0.7 131,149 + GFF5758 0.46 -2.3 131,149 + GFF5758 0.46 -1.1 131,149 + GFF5758 0.46 -1.6 131,149 + GFF5758 0.46 -0.3 131,150 - GFF5758 0.46 -0.0 131,150 - GFF5758 0.46 -0.3 131,150 - GFF5758 0.46 -2.6 131,150 - GFF5758 0.46 +0.5 131,150 - GFF5758 0.46 -0.1 131,150 - GFF5758 0.46 -0.1 131,150 - GFF5758 0.46 -0.5 131,150 - GFF5758 0.46 +1.2 131,150 - GFF5758 0.46 +0.3 131,150 - GFF5758 0.46 +0.8 131,150 - GFF5758 0.46 +0.7 131,150 - GFF5758 0.46 -1.0 131,150 - GFF5758 0.46 -0.5 131,150 - GFF5758 0.46 -0.3 131,150 - GFF5758 0.46 -1.2 131,257 + GFF5758 0.82 -1.4 131,257 + GFF5758 0.82 -0.6 131,257 + GFF5758 0.82 -0.4 131,257 + GFF5758 0.82 -0.1 131,257 + GFF5758 0.82 -1.5 131,257 + GFF5758 0.82 +0.2 131,257 + GFF5758 0.82 -0.1 131,258 - GFF5758 0.82 -0.9 131,258 - GFF5758 0.82 +1.1 131,258 - GFF5758 0.82 -0.7 131,258 - GFF5758 0.82 -0.5 131,258 - GFF5758 0.82 +1.6 131,258 - GFF5758 0.82 -0.1 131,308 + -0.1 131,308 + +0.2 131,308 + +0.4 131,308 + +0.8 131,308 + -1.2 131,308 + +0.8 131,309 - -0.4 131,313 + -0.0 131,314 - -0.6 131,314 - -1.3 131,323 + -0.6 131,324 - +0.2 131,331 + -1.8 131,333 + -0.2 131,334 - -0.6 131,335 + -0.7 131,335 + -1.6 131,335 + -0.1 131,336 - +1.0 131,336 - -0.5 131,336 - -0.4 131,370 - -0.8 131,370 - +0.3 131,412 - -0.9 131,493 + +1.8 131,493 + +0.4 131,493 + -1.7 131,494 - -0.1 131,494 - +0.1 131,494 - -1.3 131,494 - +0.0 131,494 - -0.3 131,494 - -0.2 131,494 - +0.0 131,494 - -0.8 131,553 - -0.4 131,553 - +1.7 131,559 + -1.6 131,560 - -0.3 131,588 - -0.0 131,593 - -0.7 131,703 + GFF5759 0.21 -1.0 131,703 + GFF5759 0.21 +0.6 131,713 + GFF5759 0.24 -1.8 131,713 + GFF5759 0.24 -0.8 131,713 + GFF5759 0.24 -0.3 131,713 + GFF5759 0.24 +0.5 131,714 - GFF5759 0.24 +0.8 131,714 - GFF5759 0.24 -0.6 131,714 - GFF5759 0.24 +0.2 131,714 - GFF5759 0.24 -0.3 131,714 - GFF5759 0.24 +0.0 131,714 - GFF5759 0.24 -1.8 131,715 + GFF5759 0.24 +0.3 131,715 + GFF5759 0.24 -1.1 131,715 + GFF5759 0.24 -0.2 131,715 + GFF5759 0.24 +0.3 131,715 + GFF5759 0.24 -1.2 131,715 + GFF5759 0.24 -0.2 131,715 + GFF5759 0.24 +1.2 131,715 + GFF5759 0.24 +0.5 131,716 - GFF5759 0.24 -0.4 131,716 - GFF5759 0.24 -0.6 131,716 - GFF5759 0.24 -0.8 131,716 - GFF5759 0.24 +0.3 131,716 - GFF5759 0.24 -0.5 131,716 - GFF5759 0.24 +0.4 131,716 - GFF5759 0.24 +0.4 131,716 - GFF5759 0.24 +1.3 131,716 - GFF5759 0.24 +0.2 131,716 - GFF5759 0.24 +0.0 131,716 - GFF5759 0.24 +0.1 131,716 - GFF5759 0.24 +0.8 131,716 - GFF5759 0.24 -0.5 132,147 + GFF5760 0.22 -2.0 132,147 + GFF5760 0.22 -0.4 132,147 + GFF5760 0.22 -1.2 132,147 + GFF5760 0.22 +1.0 132,147 + GFF5760 0.22 -0.7 132,147 + GFF5760 0.22 +0.0 132,148 - GFF5760 0.22 -0.8 132,148 - GFF5760 0.22 -1.3 132,148 - GFF5760 0.22 +0.4 132,148 - GFF5760 0.22 -0.7 132,197 + GFF5760 0.30 -0.1 132,197 + GFF5760 0.30 +0.3 132,207 + GFF5760 0.32 -0.4 132,207 + GFF5760 0.32 +0.0 132,207 + GFF5760 0.32 +0.1 132,207 + GFF5760 0.32 +0.4 132,207 + GFF5760 0.32 -0.3 132,207 + GFF5760 0.32 -1.6 132,207 + GFF5760 0.32 -1.0 132,208 - GFF5760 0.32 +0.7 132,208 - GFF5760 0.32 -0.2 132,246 + GFF5760 0.39 +0.5 132,246 + GFF5760 0.39 -1.3 132,246 + GFF5760 0.39 -1.3 132,246 + GFF5760 0.39 +0.1 132,246 + GFF5760 0.39 -2.9 132,247 - GFF5760 0.39 +1.1 132,247 - GFF5760 0.39 -0.5 132,247 - GFF5760 0.39 +0.7 132,247 - GFF5760 0.39 +0.2 132,247 - GFF5760 0.39 -0.4 132,255 + GFF5760 0.40 -1.3 132,255 + GFF5760 0.40 -0.4 132,256 - GFF5760 0.40 -0.6 132,256 - GFF5760 0.40 -0.7 132,256 - GFF5760 0.40 -0.4 132,256 - GFF5760 0.40 -1.0 132,321 + GFF5760 0.52 -0.8 132,321 + GFF5760 0.52 -0.3 132,321 + GFF5760 0.52 -0.3 132,480 + GFF5760 0.79 -0.2 132,480 + GFF5760 0.79 +0.7 132,480 + GFF5760 0.79 -0.6 132,480 + GFF5760 0.79 -0.5 132,480 + GFF5760 0.79 -0.0 132,480 + GFF5760 0.79 +0.0 132,481 - GFF5760 0.79 +1.1 132,481 - GFF5760 0.79 +0.5 132,481 - GFF5760 0.79 -0.7 132,481 - GFF5760 0.79 -0.1 132,481 - GFF5760 0.79 +0.1 132,481 - GFF5760 0.79 +0.7 132,481 - GFF5760 0.79 -0.7 132,481 - GFF5760 0.79 +0.1 132,603 + +0.2 132,603 + -1.9 132,603 + +1.2 132,603 + -0.5 132,604 - +1.5 132,604 - -0.1 132,607 + -1.1 132,607 + +1.5 132,608 - -1.3 132,608 - -0.6 132,608 - +0.8 132,688 + -0.7 132,690 + +1.7 132,690 + -0.7 132,690 + +1.0 132,690 + -0.6 132,690 + +0.2 132,691 - -0.3 132,691 - -0.0 132,691 - -2.7 132,691 - -0.4 132,723 + +1.7 132,723 + +0.7 132,724 - -0.5 132,894 + GFF5761 0.26 -1.5 132,894 + GFF5761 0.26 +0.4 132,894 + GFF5761 0.26 -0.0 132,894 + GFF5761 0.26 -0.4 132,894 + GFF5761 0.26 -1.1 132,894 + GFF5761 0.26 +0.1 132,894 + GFF5761 0.26 -0.4 132,894 + GFF5761 0.26 -0.9 132,894 + GFF5761 0.26 -0.8 132,894 + GFF5761 0.26 -0.7 132,894 + GFF5761 0.26 -0.1 132,894 + GFF5761 0.26 +0.4 132,895 - GFF5761 0.26 +0.2 132,895 - GFF5761 0.26 -0.3 132,918 + GFF5761 0.29 -0.2 132,919 - GFF5761 0.29 +0.2 132,919 - GFF5761 0.29 +0.0 132,919 - GFF5761 0.29 -1.7 132,919 - GFF5761 0.29 +0.1
Or see this region's nucleotide sequence