Strain Fitness in Variovorax sp. SCN45 around GFF5621

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
243,933	+		GFF5620	0.36	+0.1
243,933	+		GFF5620	0.36	-0.6
243,934	-		GFF5620	0.36	+0.3
244,068	+		GFF5620	0.49	-0.4
244,069	-		GFF5620	0.49	-0.3
244,069	-		GFF5620	0.49	-0.6
244,218	+		GFF5620	0.63	-0.1
244,219	-		GFF5620	0.63	-1.8
244,338	+		GFF5620	0.74	-1.1
244,339	-		GFF5620	0.74	+0.4
244,339	-		GFF5620	0.74	+0.2
244,398	+		GFF5620	0.80	-0.7
244,473	+		GFF5620	0.87	+0.4
244,576	-				+1.4
244,576	-				-0.2
244,606	-				-1.8
244,606	-				+0.0
244,692	-				+1.0
244,692	-				+0.1
245,165	+		GFF5621	0.59	-0.3
245,165	+		GFF5621	0.59	+0.2
245,165	+		GFF5621	0.59	-0.5
245,165	+		GFF5621	0.59	+0.1
245,165	+		GFF5621	0.59	+0.9
245,165	+		GFF5621	0.59	+3.0
245,211	-		GFF5621	0.64	+0.6
245,462	+				-0.2
245,463	-				-1.0
245,495	+				-0.2