Strain Fitness in Variovorax sp. SCN45 around GFF5589

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5587 and GFF5588 are separated by 150 nucleotidesGFF5588 and GFF5589 overlap by 4 nucleotidesGFF5589 and GFF5590 are separated by 135 nucleotides GFF5587 - Acetoin dehydrogenase E1 component alpha-subunit (EC 2.3.1.190), at 207,677 to 208,693 GFF5587 GFF5588 - hypothetical protein, at 208,844 to 209,125 GFF5588 GFF5589 - Methionine aminopeptidase (EC 3.4.11.18), at 209,122 to 209,919 GFF5589 GFF5590 - no description, at 210,055 to 210,951 GFF5590 Position (kb) 209 210Strain fitness (log2 ratio) -2 -1 0 1at 208.168 kb on - strand, within GFF5587at 208.479 kb on + strand, within GFF5587at 208.479 kb on + strand, within GFF5587at 208.479 kb on + strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.587 kb on + strand, within GFF5587at 208.587 kb on + strand, within GFF5587at 208.588 kb on - strand, within GFF5587at 208.660 kb on - strandat 208.737 kb on + strandat 208.737 kb on + strandat 208.769 kb on + strandat 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.323 kb on + strand, within GFF5589at 209.324 kb on - strand, within GFF5589at 209.324 kb on - strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.632 kb on + strand, within GFF5589at 209.633 kb on - strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.687 kb on - strand, within GFF5589at 210.463 kb on + strand, within GFF5590at 210.464 kb on - strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.592 kb on + strand, within GFF5590at 210.592 kb on + strand, within GFF5590at 210.592 kb on + strand, within GFF5590at 210.593 kb on - strand, within GFF5590at 210.593 kb on - strand, within GFF5590at 210.593 kb on - strand, within GFF5590

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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208,168 - GFF5587 0.48 +0.5
208,479 + GFF5587 0.79 -0.1
208,479 + GFF5587 0.79 +0.5
208,479 + GFF5587 0.79 -0.3
208,480 - GFF5587 0.79 +0.4
208,480 - GFF5587 0.79 -0.1
208,480 - GFF5587 0.79 +1.0
208,480 - GFF5587 0.79 -0.3
208,480 - GFF5587 0.79 +0.0
208,587 + GFF5587 0.89 +1.0
208,587 + GFF5587 0.89 -0.8
208,588 - GFF5587 0.90 -0.3
208,660 - +0.5
208,737 + +0.0
208,737 + -0.1
208,769 + +0.0
209,294 + GFF5589 0.22 +1.4
209,294 + GFF5589 0.22 +0.7
209,294 + GFF5589 0.22 +0.7
209,294 + GFF5589 0.22 -1.0
209,294 + GFF5589 0.22 -0.1
209,295 - GFF5589 0.22 -0.3
209,295 - GFF5589 0.22 +0.1
209,295 - GFF5589 0.22 -0.1
209,295 - GFF5589 0.22 +0.4
209,295 - GFF5589 0.22 +0.3
209,295 - GFF5589 0.22 -0.8
209,323 + GFF5589 0.25 +0.6
209,324 - GFF5589 0.25 -0.3
209,324 - GFF5589 0.25 +0.7
209,467 + GFF5589 0.43 -0.8
209,467 + GFF5589 0.43 -1.0
209,467 + GFF5589 0.43 -0.3
209,467 + GFF5589 0.43 -0.8
209,467 + GFF5589 0.43 -0.2
209,467 + GFF5589 0.43 -0.4
209,467 + GFF5589 0.43 -1.0
209,467 + GFF5589 0.43 -0.3
209,467 + GFF5589 0.43 +0.6
209,467 + GFF5589 0.43 -0.6
209,467 + GFF5589 0.43 -0.3
209,467 + GFF5589 0.43 +0.1
209,467 + GFF5589 0.43 +0.2
209,467 + GFF5589 0.43 -0.6
209,467 + GFF5589 0.43 -1.6
209,467 + GFF5589 0.43 +0.2
209,467 + GFF5589 0.43 -0.5
209,468 - GFF5589 0.43 +1.0
209,468 - GFF5589 0.43 -0.0
209,468 - GFF5589 0.43 +1.4
209,468 - GFF5589 0.43 +1.2
209,468 - GFF5589 0.43 +0.0
209,468 - GFF5589 0.43 -0.2
209,468 - GFF5589 0.43 -0.3
209,468 - GFF5589 0.43 +0.1
209,468 - GFF5589 0.43 -0.3
209,468 - GFF5589 0.43 -0.8
209,468 - GFF5589 0.43 +0.6
209,468 - GFF5589 0.43 -1.0
209,468 - GFF5589 0.43 +0.4
209,468 - GFF5589 0.43 -0.4
209,468 - GFF5589 0.43 +0.6
209,518 + GFF5589 0.50 -0.5
209,518 + GFF5589 0.50 +0.0
209,518 + GFF5589 0.50 -0.2
209,518 + GFF5589 0.50 +0.5
209,518 + GFF5589 0.50 -0.1
209,518 + GFF5589 0.50 -0.3
209,518 + GFF5589 0.50 -1.1
209,518 + GFF5589 0.50 +0.3
209,519 - GFF5589 0.50 +0.0
209,519 - GFF5589 0.50 +1.6
209,519 - GFF5589 0.50 +0.6
209,519 - GFF5589 0.50 +0.7
209,519 - GFF5589 0.50 -0.7
209,519 - GFF5589 0.50 +0.8
209,632 + GFF5589 0.64 -0.1
209,633 - GFF5589 0.64 +0.2
209,659 + GFF5589 0.67 +0.4
209,659 + GFF5589 0.67 +0.9
209,659 + GFF5589 0.67 +1.0
209,659 + GFF5589 0.67 -2.1
209,659 + GFF5589 0.67 +0.2
209,659 + GFF5589 0.67 +0.6
209,659 + GFF5589 0.67 +1.5
209,659 + GFF5589 0.67 -1.9
209,660 - GFF5589 0.67 -0.4
209,660 - GFF5589 0.67 -1.0
209,660 - GFF5589 0.67 +0.4
209,660 - GFF5589 0.67 -1.3
209,660 - GFF5589 0.67 -1.3
209,687 - GFF5589 0.71 +0.0
210,463 + GFF5590 0.45 +0.7
210,464 - GFF5590 0.46 -0.6
210,544 + GFF5590 0.55 +0.9
210,544 + GFF5590 0.55 -2.6
210,544 + GFF5590 0.55 +0.3
210,544 + GFF5590 0.55 +0.1
210,544 + GFF5590 0.55 -0.7
210,544 + GFF5590 0.55 +0.6
210,544 + GFF5590 0.55 -1.1
210,544 + GFF5590 0.55 +0.6
210,544 + GFF5590 0.55 -0.4
210,544 + GFF5590 0.55 +0.5
210,544 + GFF5590 0.55 -1.6
210,544 + GFF5590 0.55 -1.6
210,544 + GFF5590 0.55 -0.1
210,544 + GFF5590 0.55 -0.8
210,545 - GFF5590 0.55 +0.1
210,545 - GFF5590 0.55 +0.0
210,545 - GFF5590 0.55 +0.2
210,545 - GFF5590 0.55 +0.2
210,545 - GFF5590 0.55 -1.0
210,545 - GFF5590 0.55 -0.5
210,545 - GFF5590 0.55 -0.4
210,545 - GFF5590 0.55 +1.0
210,545 - GFF5590 0.55 -0.2
210,545 - GFF5590 0.55 -0.4
210,545 - GFF5590 0.55 -0.8
210,545 - GFF5590 0.55 +0.2
210,592 + GFF5590 0.60 -0.9
210,592 + GFF5590 0.60 -0.3
210,592 + GFF5590 0.60 -1.1
210,593 - GFF5590 0.60 +0.0
210,593 - GFF5590 0.60 +1.7
210,593 - GFF5590 0.60 +0.6

Or see this region's nucleotide sequence