Strain Fitness in Variovorax sp. SCN45 around GFF5573

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5571 and GFF5572 are separated by 218 nucleotidesGFF5572 and GFF5573 are separated by 110 nucleotidesGFF5573 and GFF5574 are separated by 30 nucleotidesGFF5574 and GFF5575 overlap by 4 nucleotides GFF5571 - LSU ribosomal protein L17p, at 192,021 to 192,419 GFF5571 GFF5572 - FIG00984604: hypothetical protein, at 192,638 to 193,288 GFF5572 GFF5573 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 193,399 to 194,373 GFF5573 GFF5574 - RidA/YER057c/UK114 superfamily protein, at 194,404 to 194,805 GFF5574 GFF5575 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 194,802 to 196,424 GFF5575 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 192.417 kb on + strandat 192.417 kb on + strandat 192.518 kb on + strandat 192.620 kb on + strandat 192.621 kb on - strandat 192.621 kb on - strandat 192.621 kb on - strandat 192.621 kb on - strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.625 kb on - strandat 192.625 kb on - strandat 192.625 kb on - strandat 192.625 kb on - strandat 192.628 kb on + strandat 192.629 kb on - strandat 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.805 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.850 kb on - strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.931 kb on + strand, within GFF5572at 192.932 kb on - strand, within GFF5572at 193.073 kb on + strand, within GFF5572at 193.073 kb on + strand, within GFF5572at 193.074 kb on - strand, within GFF5572at 193.104 kb on + strand, within GFF5572at 193.104 kb on + strand, within GFF5572at 193.161 kb on + strand, within GFF5572at 193.256 kb on + strandat 193.256 kb on + strandat 193.256 kb on + strandat 193.257 kb on - strandat 193.321 kb on + strandat 193.321 kb on + strandat 193.373 kb on + strandat 193.514 kb on - strand, within GFF5573at 193.514 kb on - strand, within GFF5573at 193.514 kb on - strand, within GFF5573at 193.514 kb on - strand, within GFF5573at 193.822 kb on + strand, within GFF5573at 193.822 kb on + strand, within GFF5573at 193.823 kb on - strand, within GFF5573at 194.896 kb on + strandat 195.098 kb on - strand, within GFF5575at 195.098 kb on - strand, within GFF5575at 195.137 kb on - strand, within GFF5575at 195.181 kb on + strand, within GFF5575at 195.202 kb on + strand, within GFF5575at 195.202 kb on + strand, within GFF5575at 195.203 kb on - strand, within GFF5575at 195.203 kb on - strand, within GFF5575at 195.355 kb on - strand, within GFF5575at 195.355 kb on - strand, within GFF5575

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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192,417 + -0.0
192,417 + -0.5
192,518 + -0.1
192,620 + +1.4
192,621 - +0.2
192,621 - -0.6
192,621 - +1.0
192,621 - +0.4
192,624 + +0.1
192,624 + -0.8
192,624 + +0.8
192,624 + -0.5
192,624 + -0.6
192,624 + +0.1
192,624 + -0.3
192,625 - -0.6
192,625 - -0.8
192,625 - -0.7
192,625 - -0.8
192,628 + -0.6
192,629 - +0.2
192,768 + GFF5572 0.20 +1.2
192,768 + GFF5572 0.20 +0.2
192,768 + GFF5572 0.20 +0.7
192,768 + GFF5572 0.20 +0.2
192,768 + GFF5572 0.20 +0.3
192,768 + GFF5572 0.20 -0.8
192,769 - GFF5572 0.20 -0.4
192,769 - GFF5572 0.20 -0.2
192,769 - GFF5572 0.20 -1.6
192,769 - GFF5572 0.20 -0.4
192,769 - GFF5572 0.20 -1.4
192,805 + GFF5572 0.26 +0.2
192,849 + GFF5572 0.32 +0.5
192,849 + GFF5572 0.32 -0.5
192,849 + GFF5572 0.32 +0.7
192,849 + GFF5572 0.32 +0.7
192,849 + GFF5572 0.32 +0.3
192,849 + GFF5572 0.32 -0.1
192,850 - GFF5572 0.33 +0.2
192,858 + GFF5572 0.34 -0.0
192,858 + GFF5572 0.34 +1.8
192,858 + GFF5572 0.34 +0.2
192,858 + GFF5572 0.34 -0.5
192,858 + GFF5572 0.34 +0.1
192,859 - GFF5572 0.34 -0.6
192,859 - GFF5572 0.34 -0.2
192,859 - GFF5572 0.34 +1.7
192,859 - GFF5572 0.34 -0.4
192,859 - GFF5572 0.34 -1.1
192,859 - GFF5572 0.34 +0.3
192,919 + GFF5572 0.43 +0.8
192,919 + GFF5572 0.43 -0.1
192,919 + GFF5572 0.43 -0.1
192,919 + GFF5572 0.43 +0.6
192,919 + GFF5572 0.43 +0.1
192,919 + GFF5572 0.43 +0.3
192,919 + GFF5572 0.43 -0.0
192,919 + GFF5572 0.43 -0.1
192,919 + GFF5572 0.43 +0.7
192,920 - GFF5572 0.43 -0.3
192,920 - GFF5572 0.43 -0.3
192,920 - GFF5572 0.43 -0.3
192,920 - GFF5572 0.43 +0.2
192,920 - GFF5572 0.43 -0.1
192,920 - GFF5572 0.43 -0.8
192,920 - GFF5572 0.43 -0.5
192,920 - GFF5572 0.43 -0.1
192,920 - GFF5572 0.43 -0.1
192,920 - GFF5572 0.43 -0.3
192,920 - GFF5572 0.43 -0.3
192,920 - GFF5572 0.43 -0.5
192,920 - GFF5572 0.43 -1.0
192,931 + GFF5572 0.45 +0.8
192,932 - GFF5572 0.45 +1.3
193,073 + GFF5572 0.67 +1.2
193,073 + GFF5572 0.67 -0.4
193,074 - GFF5572 0.67 -0.4
193,104 + GFF5572 0.72 -0.1
193,104 + GFF5572 0.72 -1.9
193,161 + GFF5572 0.80 -0.7
193,256 + -1.5
193,256 + +0.1
193,256 + +0.2
193,257 - -0.3
193,321 + -0.3
193,321 + +0.7
193,373 + +1.4
193,514 - GFF5573 0.12 -0.1
193,514 - GFF5573 0.12 -0.5
193,514 - GFF5573 0.12 -0.4
193,514 - GFF5573 0.12 -0.7
193,822 + GFF5573 0.43 -0.2
193,822 + GFF5573 0.43 -2.4
193,823 - GFF5573 0.43 -1.0
194,896 + -0.1
195,098 - GFF5575 0.18 -0.4
195,098 - GFF5575 0.18 +1.0
195,137 - GFF5575 0.21 -0.6
195,181 + GFF5575 0.23 -1.1
195,202 + GFF5575 0.25 -0.3
195,202 + GFF5575 0.25 -0.5
195,203 - GFF5575 0.25 -0.5
195,203 - GFF5575 0.25 -0.0
195,355 - GFF5575 0.34 -0.6
195,355 - GFF5575 0.34 -0.4

Or see this region's nucleotide sequence