Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5542 and GFF5543 are separated by 173 nucleotides GFF5543 and GFF5544 are separated by 2 nucleotides GFF5544 and GFF5545 are separated by 10 nucleotides GFF5545 and GFF5546 are separated by 45 nucleotides
GFF5542 - no description, at 171,106 to 171,207
GFF5542
GFF5543 - FIG015373: Membrane protein, at 171,381 to 172,118
GFF5543
GFF5544 - FIG001614: Membrane protein, at 172,121 to 173,077
GFF5544
GFF5545 - Pyrrolidone-carboxylate peptidase (EC 3.4.19.3), at 173,088 to 173,771
GFF5545
GFF5546 - Lactam utilization protein LamB, at 173,817 to 174,584
GFF5546
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 171.152 kb on - strand, within GFF5542 at 171.152 kb on - strand, within GFF5542 at 171.152 kb on - strand, within GFF5542 at 171.152 kb on - strand, within GFF5542 at 171.152 kb on - strand, within GFF5542 at 171.152 kb on - strand, within GFF5542 at 171.152 kb on - strand, within GFF5542 at 171.268 kb on + strand at 171.269 kb on - strand at 171.269 kb on - strand at 171.269 kb on - strand at 171.269 kb on - strand at 171.269 kb on - strand at 171.690 kb on + strand, within GFF5543 at 171.691 kb on - strand, within GFF5543 at 171.691 kb on - strand, within GFF5543 at 171.691 kb on - strand, within GFF5543 at 171.846 kb on + strand, within GFF5543 at 171.846 kb on + strand, within GFF5543 at 171.846 kb on + strand, within GFF5543 at 171.847 kb on - strand, within GFF5543 at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.146 kb on - strand at 172.217 kb on + strand, within GFF5544 at 172.217 kb on + strand, within GFF5544 at 172.217 kb on + strand, within GFF5544 at 172.217 kb on + strand, within GFF5544 at 172.217 kb on + strand, within GFF5544 at 172.218 kb on - strand, within GFF5544 at 172.218 kb on - strand, within GFF5544 at 172.218 kb on - strand, within GFF5544 at 172.218 kb on - strand, within GFF5544 at 172.244 kb on + strand, within GFF5544 at 172.244 kb on + strand, within GFF5544 at 172.244 kb on + strand, within GFF5544 at 172.244 kb on + strand, within GFF5544 at 172.244 kb on + strand, within GFF5544 at 172.245 kb on - strand, within GFF5544 at 172.245 kb on - strand, within GFF5544 at 172.245 kb on - strand, within GFF5544 at 172.245 kb on - strand, within GFF5544 at 172.245 kb on - strand, within GFF5544 at 172.245 kb on - strand, within GFF5544 at 172.376 kb on + strand, within GFF5544 at 172.376 kb on + strand, within GFF5544 at 172.376 kb on + strand, within GFF5544 at 172.376 kb on + strand, within GFF5544 at 172.377 kb on - strand, within GFF5544 at 172.377 kb on - strand, within GFF5544 at 172.377 kb on - strand, within GFF5544 at 172.377 kb on - strand, within GFF5544 at 172.377 kb on - strand, within GFF5544 at 172.377 kb on - strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.724 kb on + strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.725 kb on - strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.763 kb on + strand, within GFF5544 at 172.764 kb on - strand, within GFF5544 at 172.764 kb on - strand, within GFF5544 at 172.764 kb on - strand, within GFF5544 at 172.764 kb on - strand, within GFF5544 at 172.764 kb on - strand, within GFF5544 at 172.764 kb on - strand, within GFF5544 at 172.764 kb on - strand, within GFF5544 at 172.764 kb on - strand, within GFF5544 at 172.764 kb on - strand, within GFF5544 at 172.865 kb on + strand, within GFF5544 at 172.865 kb on + strand, within GFF5544 at 172.865 kb on + strand, within GFF5544 at 172.865 kb on + strand, within GFF5544 at 172.865 kb on + strand, within GFF5544 at 172.866 kb on - strand, within GFF5544 at 172.866 kb on - strand, within GFF5544 at 172.913 kb on + strand, within GFF5544 at 172.914 kb on - strand, within GFF5544 at 173.013 kb on + strand at 173.013 kb on + strand at 173.013 kb on + strand at 173.014 kb on - strand at 173.014 kb on - strand at 173.014 kb on - strand at 173.057 kb on + strand at 173.057 kb on + strand at 173.057 kb on + strand at 173.058 kb on - strand at 173.058 kb on - strand at 173.406 kb on + strand, within GFF5545 at 173.451 kb on + strand, within GFF5545 at 173.451 kb on + strand, within GFF5545 at 173.451 kb on + strand, within GFF5545 at 173.452 kb on - strand, within GFF5545 at 173.452 kb on - strand, within GFF5545 at 173.556 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.560 kb on - strand, within GFF5545 at 173.560 kb on - strand, within GFF5545 at 173.560 kb on - strand, within GFF5545 at 173.560 kb on - strand, within GFF5545 at 173.631 kb on + strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 174.009 kb on + strand, within GFF5546 at 174.010 kb on - strand, within GFF5546
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 171,152 - GFF5542 0.45 +0.7 171,152 - GFF5542 0.45 +0.7 171,152 - GFF5542 0.45 +2.0 171,152 - GFF5542 0.45 -1.4 171,152 - GFF5542 0.45 -0.7 171,152 - GFF5542 0.45 -1.0 171,152 - GFF5542 0.45 -0.0 171,268 + -1.3 171,269 - -2.9 171,269 - -0.3 171,269 - -0.2 171,269 - +0.2 171,269 - -1.0 171,690 + GFF5543 0.42 +2.0 171,691 - GFF5543 0.42 +0.3 171,691 - GFF5543 0.42 -0.5 171,691 - GFF5543 0.42 +0.4 171,846 + GFF5543 0.63 +0.5 171,846 + GFF5543 0.63 +0.1 171,846 + GFF5543 0.63 +0.5 171,847 - GFF5543 0.63 +0.4 172,145 + -1.0 172,145 + +0.1 172,145 + -0.6 172,145 + +0.6 172,145 + +1.0 172,145 + +0.1 172,145 + -0.1 172,145 + -0.3 172,145 + -1.4 172,145 + -3.4 172,145 + -0.4 172,145 + -1.1 172,145 + +1.6 172,145 + +0.2 172,145 + -1.8 172,145 + +0.3 172,145 + -0.1 172,145 + -1.0 172,145 + +0.6 172,146 - -0.4 172,146 - -0.6 172,146 - +0.2 172,146 - -0.9 172,146 - +0.0 172,146 - +0.3 172,146 - -0.5 172,146 - -0.2 172,146 - -0.4 172,146 - -1.9 172,146 - -0.8 172,146 - +1.0 172,146 - +0.7 172,146 - +0.4 172,146 - -0.3 172,146 - -0.4 172,146 - +0.3 172,146 - -1.1 172,146 - -0.8 172,146 - +1.2 172,146 - +0.9 172,217 + GFF5544 0.10 +1.0 172,217 + GFF5544 0.10 +0.1 172,217 + GFF5544 0.10 -0.3 172,217 + GFF5544 0.10 +0.3 172,217 + GFF5544 0.10 -0.6 172,218 - GFF5544 0.10 -0.6 172,218 - GFF5544 0.10 -0.6 172,218 - GFF5544 0.10 -0.6 172,218 - GFF5544 0.10 -0.8 172,244 + GFF5544 0.13 +0.3 172,244 + GFF5544 0.13 -1.6 172,244 + GFF5544 0.13 -1.4 172,244 + GFF5544 0.13 -0.6 172,244 + GFF5544 0.13 +1.2 172,245 - GFF5544 0.13 -0.2 172,245 - GFF5544 0.13 -0.8 172,245 - GFF5544 0.13 -0.0 172,245 - GFF5544 0.13 -0.4 172,245 - GFF5544 0.13 +0.3 172,245 - GFF5544 0.13 +0.0 172,376 + GFF5544 0.27 +0.2 172,376 + GFF5544 0.27 +0.1 172,376 + GFF5544 0.27 -0.9 172,376 + GFF5544 0.27 +0.7 172,377 - GFF5544 0.27 +0.0 172,377 - GFF5544 0.27 -0.8 172,377 - GFF5544 0.27 +0.6 172,377 - GFF5544 0.27 -1.2 172,377 - GFF5544 0.27 -0.5 172,377 - GFF5544 0.27 -0.2 172,724 + GFF5544 0.63 +0.4 172,724 + GFF5544 0.63 +0.3 172,724 + GFF5544 0.63 +1.6 172,724 + GFF5544 0.63 -0.2 172,724 + GFF5544 0.63 -0.3 172,724 + GFF5544 0.63 -0.4 172,724 + GFF5544 0.63 -0.5 172,724 + GFF5544 0.63 -1.0 172,724 + GFF5544 0.63 -0.1 172,724 + GFF5544 0.63 -1.9 172,724 + GFF5544 0.63 -0.2 172,724 + GFF5544 0.63 +0.3 172,724 + GFF5544 0.63 -1.1 172,724 + GFF5544 0.63 +0.4 172,724 + GFF5544 0.63 +1.1 172,724 + GFF5544 0.63 +0.4 172,725 - GFF5544 0.63 +1.2 172,725 - GFF5544 0.63 -1.0 172,725 - GFF5544 0.63 +0.2 172,725 - GFF5544 0.63 -0.3 172,725 - GFF5544 0.63 -0.0 172,725 - GFF5544 0.63 +0.2 172,725 - GFF5544 0.63 -0.2 172,725 - GFF5544 0.63 -0.0 172,725 - GFF5544 0.63 -0.3 172,725 - GFF5544 0.63 -0.4 172,725 - GFF5544 0.63 -0.6 172,725 - GFF5544 0.63 -0.1 172,725 - GFF5544 0.63 +0.0 172,725 - GFF5544 0.63 -0.4 172,725 - GFF5544 0.63 -0.2 172,725 - GFF5544 0.63 -0.2 172,725 - GFF5544 0.63 +0.0 172,725 - GFF5544 0.63 +1.2 172,725 - GFF5544 0.63 -0.5 172,725 - GFF5544 0.63 -0.3 172,725 - GFF5544 0.63 +0.4 172,725 - GFF5544 0.63 -0.6 172,725 - GFF5544 0.63 -0.9 172,763 + GFF5544 0.67 +0.3 172,763 + GFF5544 0.67 -0.2 172,763 + GFF5544 0.67 -2.7 172,763 + GFF5544 0.67 +1.4 172,763 + GFF5544 0.67 -0.3 172,763 + GFF5544 0.67 -1.1 172,763 + GFF5544 0.67 -0.8 172,763 + GFF5544 0.67 -0.3 172,763 + GFF5544 0.67 -0.9 172,763 + GFF5544 0.67 +0.5 172,764 - GFF5544 0.67 -0.8 172,764 - GFF5544 0.67 +0.8 172,764 - GFF5544 0.67 -0.6 172,764 - GFF5544 0.67 -0.8 172,764 - GFF5544 0.67 +0.2 172,764 - GFF5544 0.67 -1.7 172,764 - GFF5544 0.67 -0.7 172,764 - GFF5544 0.67 -0.2 172,764 - GFF5544 0.67 -1.0 172,865 + GFF5544 0.78 -0.6 172,865 + GFF5544 0.78 -0.5 172,865 + GFF5544 0.78 -1.7 172,865 + GFF5544 0.78 -1.6 172,865 + GFF5544 0.78 -0.8 172,866 - GFF5544 0.78 -0.6 172,866 - GFF5544 0.78 -0.5 172,913 + GFF5544 0.83 +0.2 172,914 - GFF5544 0.83 -0.3 173,013 + -0.3 173,013 + -1.0 173,013 + +0.2 173,014 - -0.2 173,014 - -0.7 173,014 - -0.5 173,057 + +1.0 173,057 + +0.0 173,057 + -1.8 173,058 - +0.3 173,058 - -0.4 173,406 + GFF5545 0.46 +0.1 173,451 + GFF5545 0.53 -1.0 173,451 + GFF5545 0.53 -0.2 173,451 + GFF5545 0.53 +0.2 173,452 - GFF5545 0.53 +1.2 173,452 - GFF5545 0.53 -0.4 173,556 + GFF5545 0.68 -0.5 173,559 + GFF5545 0.69 -0.2 173,559 + GFF5545 0.69 -0.8 173,559 + GFF5545 0.69 +0.1 173,559 + GFF5545 0.69 -0.5 173,559 + GFF5545 0.69 +0.1 173,559 + GFF5545 0.69 +0.0 173,559 + GFF5545 0.69 -0.5 173,559 + GFF5545 0.69 -1.4 173,560 - GFF5545 0.69 -0.5 173,560 - GFF5545 0.69 +0.2 173,560 - GFF5545 0.69 -0.9 173,560 - GFF5545 0.69 +0.8 173,631 + GFF5545 0.79 +0.4 173,632 - GFF5545 0.80 +0.1 173,632 - GFF5545 0.80 +1.3 173,632 - GFF5545 0.80 -0.9 173,632 - GFF5545 0.80 +0.8 173,632 - GFF5545 0.80 +1.7 174,009 + GFF5546 0.25 -1.1 174,010 - GFF5546 0.25 +0.9
Or see this region's nucleotide sequence