Strain Fitness in Variovorax sp. SCN45 around GFF5521

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5519 and GFF5520 are separated by 111 nucleotidesGFF5520 and GFF5521 overlap by 4 nucleotidesGFF5521 and GFF5522 overlap by 4 nucleotidesGFF5522 and GFF5523 are separated by 55 nucleotides GFF5519 - Transcriptional regulator, at 150,055 to 150,846 GFF5519 GFF5520 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 150,958 to 151,689 GFF5520 GFF5521 - Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128), at 151,686 to 152,228 GFF5521 GFF5522 - Uracil-DNA glycosylase, family 4 (EC 3.2.2.27), at 152,225 to 153,067 GFF5522 GFF5523 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 153,123 to 153,947 GFF5523 Position (kb) 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 150.844 kb on + strandat 150.882 kb on - strandat 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.776 kb on + strand, within GFF5521at 151.777 kb on - strand, within GFF5521at 151.777 kb on - strand, within GFF5521at 151.777 kb on - strand, within GFF5521at 151.777 kb on - strand, within GFF5521at 151.777 kb on - strand, within GFF5521at 151.827 kb on + strand, within GFF5521at 151.827 kb on + strand, within GFF5521at 151.827 kb on + strand, within GFF5521at 151.828 kb on - strand, within GFF5521at 151.828 kb on - strand, within GFF5521at 151.828 kb on - strand, within GFF5521at 151.911 kb on + strand, within GFF5521at 151.911 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.942 kb on + strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 151.943 kb on - strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.094 kb on + strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.095 kb on - strand, within GFF5521at 152.136 kb on + strand, within GFF5521at 152.136 kb on + strand, within GFF5521at 152.136 kb on + strand, within GFF5521at 152.136 kb on + strand, within GFF5521at 152.136 kb on + strand, within GFF5521at 152.136 kb on + strand, within GFF5521at 152.136 kb on + strand, within GFF5521at 152.136 kb on + strand, within GFF5521at 152.137 kb on - strand, within GFF5521at 152.137 kb on - strand, within GFF5521at 152.137 kb on - strand, within GFF5521at 152.137 kb on - strand, within GFF5521at 152.137 kb on - strand, within GFF5521at 152.137 kb on - strand, within GFF5521at 152.137 kb on - strand, within GFF5521at 152.137 kb on - strand, within GFF5521at 152.137 kb on - strand, within GFF5521at 152.139 kb on + strand, within GFF5521at 152.139 kb on + strand, within GFF5521at 152.139 kb on + strand, within GFF5521at 152.140 kb on - strand, within GFF5521at 152.140 kb on - strand, within GFF5521at 152.156 kb on + strand, within GFF5521at 152.156 kb on + strand, within GFF5521at 152.156 kb on + strand, within GFF5521at 152.156 kb on + strand, within GFF5521at 152.157 kb on - strand, within GFF5521at 153.109 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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150,844 + -0.7
150,882 - -0.6
151,776 + GFF5521 0.17 +0.2
151,776 + GFF5521 0.17 +0.0
151,776 + GFF5521 0.17 +0.4
151,776 + GFF5521 0.17 -0.8
151,776 + GFF5521 0.17 -0.3
151,776 + GFF5521 0.17 +0.7
151,776 + GFF5521 0.17 +0.9
151,776 + GFF5521 0.17 -0.6
151,776 + GFF5521 0.17 -0.6
151,776 + GFF5521 0.17 +0.1
151,776 + GFF5521 0.17 +0.3
151,776 + GFF5521 0.17 +0.0
151,776 + GFF5521 0.17 -0.2
151,777 - GFF5521 0.17 +1.0
151,777 - GFF5521 0.17 -0.1
151,777 - GFF5521 0.17 +0.9
151,777 - GFF5521 0.17 +1.0
151,777 - GFF5521 0.17 +1.0
151,827 + GFF5521 0.26 +0.6
151,827 + GFF5521 0.26 +2.0
151,827 + GFF5521 0.26 +1.3
151,828 - GFF5521 0.26 +1.0
151,828 - GFF5521 0.26 -0.8
151,828 - GFF5521 0.26 -0.1
151,911 + GFF5521 0.41 +0.4
151,911 + GFF5521 0.41 -1.0
151,942 + GFF5521 0.47 +0.8
151,942 + GFF5521 0.47 +0.5
151,942 + GFF5521 0.47 +1.4
151,942 + GFF5521 0.47 +0.4
151,942 + GFF5521 0.47 -2.4
151,942 + GFF5521 0.47 +0.1
151,942 + GFF5521 0.47 +0.9
151,942 + GFF5521 0.47 +0.1
151,942 + GFF5521 0.47 +0.5
151,942 + GFF5521 0.47 -0.6
151,942 + GFF5521 0.47 +0.2
151,942 + GFF5521 0.47 +0.3
151,943 - GFF5521 0.47 -0.3
151,943 - GFF5521 0.47 -0.0
151,943 - GFF5521 0.47 +0.0
151,943 - GFF5521 0.47 +0.4
151,943 - GFF5521 0.47 -2.8
151,943 - GFF5521 0.47 -0.6
151,943 - GFF5521 0.47 +0.1
151,943 - GFF5521 0.47 +0.2
151,943 - GFF5521 0.47 -0.4
151,943 - GFF5521 0.47 -0.2
151,943 - GFF5521 0.47 -0.8
151,943 - GFF5521 0.47 -0.7
151,943 - GFF5521 0.47 +4.4
151,943 - GFF5521 0.47 +0.7
151,943 - GFF5521 0.47 -1.5
151,943 - GFF5521 0.47 -0.5
152,094 + GFF5521 0.75 -0.3
152,094 + GFF5521 0.75 +0.6
152,094 + GFF5521 0.75 -0.2
152,094 + GFF5521 0.75 +0.4
152,094 + GFF5521 0.75 +0.2
152,094 + GFF5521 0.75 +1.8
152,094 + GFF5521 0.75 -0.0
152,094 + GFF5521 0.75 -0.7
152,094 + GFF5521 0.75 -1.6
152,094 + GFF5521 0.75 +0.2
152,094 + GFF5521 0.75 -0.2
152,094 + GFF5521 0.75 +0.0
152,094 + GFF5521 0.75 -1.6
152,094 + GFF5521 0.75 -1.1
152,094 + GFF5521 0.75 +0.4
152,094 + GFF5521 0.75 -2.0
152,094 + GFF5521 0.75 +0.4
152,094 + GFF5521 0.75 -0.7
152,094 + GFF5521 0.75 -0.2
152,095 - GFF5521 0.75 +0.2
152,095 - GFF5521 0.75 +0.5
152,095 - GFF5521 0.75 -0.8
152,095 - GFF5521 0.75 -0.2
152,095 - GFF5521 0.75 +1.4
152,095 - GFF5521 0.75 -1.9
152,095 - GFF5521 0.75 -1.3
152,095 - GFF5521 0.75 +0.4
152,095 - GFF5521 0.75 +0.2
152,095 - GFF5521 0.75 -0.0
152,095 - GFF5521 0.75 +0.1
152,095 - GFF5521 0.75 +0.4
152,095 - GFF5521 0.75 -1.3
152,095 - GFF5521 0.75 -1.2
152,095 - GFF5521 0.75 -0.1
152,136 + GFF5521 0.83 +1.4
152,136 + GFF5521 0.83 -0.6
152,136 + GFF5521 0.83 +0.0
152,136 + GFF5521 0.83 +0.0
152,136 + GFF5521 0.83 +0.5
152,136 + GFF5521 0.83 +1.4
152,136 + GFF5521 0.83 -0.4
152,136 + GFF5521 0.83 -0.1
152,137 - GFF5521 0.83 +0.0
152,137 - GFF5521 0.83 +0.4
152,137 - GFF5521 0.83 -0.9
152,137 - GFF5521 0.83 -2.4
152,137 - GFF5521 0.83 +0.0
152,137 - GFF5521 0.83 -0.4
152,137 - GFF5521 0.83 +0.3
152,137 - GFF5521 0.83 -1.2
152,137 - GFF5521 0.83 +0.2
152,139 + GFF5521 0.83 +0.6
152,139 + GFF5521 0.83 -0.4
152,139 + GFF5521 0.83 +0.0
152,140 - GFF5521 0.84 +0.2
152,140 - GFF5521 0.84 +0.3
152,156 + GFF5521 0.87 -0.4
152,156 + GFF5521 0.87 +0.3
152,156 + GFF5521 0.87 -0.3
152,156 + GFF5521 0.87 -0.8
152,157 - GFF5521 0.87 -0.3
153,109 + -0.7

Or see this region's nucleotide sequence