Strain Fitness in Variovorax sp. SCN45 around GFF5468

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5467 and GFF5468 are separated by 85 nucleotidesGFF5468 and GFF5469 are separated by 129 nucleotidesGFF5469 and GFF5470 are separated by 7 nucleotides GFF5467 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 96,661 to 97,689 GFF5467 GFF5468 - FAD/FMN-containing dehydrogenase, at 97,775 to 99,157 GFF5468 GFF5469 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 99,287 to 100,141 GFF5469 GFF5470 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 100,149 to 100,952 GFF5470 Position (kb) 97 98 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 96.785 kb on + strand, within GFF5467at 96.786 kb on - strand, within GFF5467at 96.957 kb on - strand, within GFF5467at 96.957 kb on - strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 97.058 kb on + strand, within GFF5467at 97.059 kb on - strand, within GFF5467at 97.145 kb on + strand, within GFF5467at 97.145 kb on + strand, within GFF5467at 97.145 kb on + strand, within GFF5467at 97.146 kb on - strand, within GFF5467at 97.146 kb on - strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.200 kb on - strand, within GFF5467at 97.200 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.554 kb on - strand, within GFF5467at 97.554 kb on - strand, within GFF5467at 97.721 kb on + strandat 97.722 kb on - strandat 97.743 kb on - strandat 97.968 kb on + strand, within GFF5468at 97.968 kb on + strand, within GFF5468at 97.969 kb on - strand, within GFF5468at 97.969 kb on - strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.133 kb on + strand, within GFF5468at 98.133 kb on + strand, within GFF5468at 98.134 kb on - strand, within GFF5468at 98.134 kb on - strand, within GFF5468at 98.134 kb on - strand, within GFF5468at 98.134 kb on - strand, within GFF5468at 98.193 kb on + strand, within GFF5468at 98.193 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.361 kb on + strand, within GFF5468at 98.361 kb on + strand, within GFF5468at 98.451 kb on + strand, within GFF5468at 98.538 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 99.033 kb on + strandat 99.033 kb on + strandat 99.033 kb on + strandat 99.033 kb on + strandat 99.034 kb on - strandat 99.034 kb on - strandat 99.144 kb on + strandat 99.145 kb on - strandat 99.145 kb on - strandat 99.145 kb on - strandat 99.145 kb on - strandat 99.237 kb on - strandat 99.288 kb on + strandat 99.288 kb on + strandat 99.289 kb on - strandat 99.289 kb on - strandat 99.549 kb on + strand, within GFF5469at 99.549 kb on + strand, within GFF5469at 99.550 kb on - strand, within GFF5469at 99.550 kb on - strand, within GFF5469at 99.550 kb on - strand, within GFF5469at 99.550 kb on - strand, within GFF5469at 99.576 kb on + strand, within GFF5469at 99.576 kb on + strand, within GFF5469at 99.577 kb on - strand, within GFF5469at 99.577 kb on - strand, within GFF5469at 99.606 kb on + strand, within GFF5469at 99.606 kb on + strand, within GFF5469at 99.606 kb on + strand, within GFF5469at 99.606 kb on + strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.732 kb on + strand, within GFF5469at 99.732 kb on + strand, within GFF5469at 99.732 kb on + strand, within GFF5469at 99.732 kb on + strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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96,785 + GFF5467 0.12 +0.3
96,786 - GFF5467 0.12 -0.4
96,957 - GFF5467 0.29 -0.5
96,957 - GFF5467 0.29 +0.0
96,962 + GFF5467 0.29 -1.0
96,962 + GFF5467 0.29 +0.7
96,962 + GFF5467 0.29 -0.2
96,962 + GFF5467 0.29 -0.5
96,962 + GFF5467 0.29 -0.2
96,963 - GFF5467 0.29 -0.8
96,963 - GFF5467 0.29 +0.2
96,963 - GFF5467 0.29 -0.1
96,963 - GFF5467 0.29 +0.3
96,963 - GFF5467 0.29 -0.3
96,963 - GFF5467 0.29 -0.4
96,963 - GFF5467 0.29 -1.1
96,963 - GFF5467 0.29 +1.0
97,058 + GFF5467 0.39 -0.8
97,059 - GFF5467 0.39 -0.3
97,145 + GFF5467 0.47 +0.2
97,145 + GFF5467 0.47 -0.2
97,145 + GFF5467 0.47 +1.4
97,146 - GFF5467 0.47 +0.4
97,146 - GFF5467 0.47 -0.1
97,199 + GFF5467 0.52 +0.1
97,199 + GFF5467 0.52 +1.8
97,199 + GFF5467 0.52 +0.1
97,199 + GFF5467 0.52 -0.8
97,199 + GFF5467 0.52 -1.9
97,200 - GFF5467 0.52 +1.0
97,200 - GFF5467 0.52 -0.8
97,521 - GFF5467 0.84 +0.1
97,521 - GFF5467 0.84 -0.3
97,521 - GFF5467 0.84 +0.1
97,521 - GFF5467 0.84 -0.0
97,521 - GFF5467 0.84 -0.3
97,521 - GFF5467 0.84 -0.3
97,529 + GFF5467 0.84 -0.1
97,529 + GFF5467 0.84 +1.2
97,529 + GFF5467 0.84 -1.2
97,529 + GFF5467 0.84 -0.4
97,529 + GFF5467 0.84 -0.9
97,529 + GFF5467 0.84 -0.7
97,529 + GFF5467 0.84 -0.6
97,530 - GFF5467 0.84 +1.0
97,530 - GFF5467 0.84 -0.4
97,530 - GFF5467 0.84 -0.6
97,530 - GFF5467 0.84 +0.0
97,530 - GFF5467 0.84 -0.9
97,530 - GFF5467 0.84 +0.4
97,530 - GFF5467 0.84 +2.0
97,530 - GFF5467 0.84 +0.4
97,530 - GFF5467 0.84 +0.4
97,530 - GFF5467 0.84 +1.3
97,554 - GFF5467 0.87 -1.3
97,554 - GFF5467 0.87 -1.0
97,721 + -1.9
97,722 - +0.1
97,743 - +0.4
97,968 + GFF5468 0.14 -1.4
97,968 + GFF5468 0.14 +0.2
97,969 - GFF5468 0.14 +0.1
97,969 - GFF5468 0.14 +0.2
98,118 + GFF5468 0.25 -0.3
98,118 + GFF5468 0.25 -0.3
98,118 + GFF5468 0.25 +0.6
98,118 + GFF5468 0.25 -0.9
98,118 + GFF5468 0.25 +1.4
98,119 - GFF5468 0.25 -2.0
98,119 - GFF5468 0.25 -1.1
98,119 - GFF5468 0.25 +2.4
98,119 - GFF5468 0.25 +0.2
98,119 - GFF5468 0.25 +0.6
98,119 - GFF5468 0.25 +0.6
98,133 + GFF5468 0.26 +0.8
98,133 + GFF5468 0.26 -1.2
98,134 - GFF5468 0.26 -2.2
98,134 - GFF5468 0.26 -1.0
98,134 - GFF5468 0.26 +0.6
98,134 - GFF5468 0.26 -1.0
98,193 + GFF5468 0.30 +0.1
98,193 + GFF5468 0.30 +0.0
98,358 + GFF5468 0.42 -0.6
98,358 + GFF5468 0.42 -0.3
98,358 + GFF5468 0.42 -0.2
98,358 + GFF5468 0.42 -1.0
98,358 + GFF5468 0.42 +1.3
98,358 + GFF5468 0.42 +2.0
98,358 + GFF5468 0.42 +0.4
98,358 + GFF5468 0.42 +1.6
98,359 - GFF5468 0.42 -0.0
98,359 - GFF5468 0.42 -0.3
98,359 - GFF5468 0.42 +0.4
98,359 - GFF5468 0.42 -1.2
98,359 - GFF5468 0.42 -1.8
98,361 + GFF5468 0.42 -0.7
98,361 + GFF5468 0.42 +0.3
98,451 + GFF5468 0.49 +1.1
98,538 + GFF5468 0.55 -0.1
98,886 + GFF5468 0.80 -0.7
98,886 + GFF5468 0.80 -0.1
98,886 + GFF5468 0.80 +1.0
98,886 + GFF5468 0.80 +0.6
98,886 + GFF5468 0.80 +0.5
98,886 + GFF5468 0.80 -0.6
98,887 - GFF5468 0.80 -1.6
98,887 - GFF5468 0.80 +0.4
98,887 - GFF5468 0.80 +0.4
98,887 - GFF5468 0.80 -0.5
98,887 - GFF5468 0.80 -1.0
98,887 - GFF5468 0.80 -0.5
99,033 + -0.1
99,033 + -0.4
99,033 + -1.6
99,033 + +0.6
99,034 - -0.1
99,034 - -0.6
99,144 + +0.7
99,145 - +0.3
99,145 - +0.2
99,145 - -0.1
99,145 - -0.4
99,237 - +0.0
99,288 + +2.0
99,288 + -0.1
99,289 - +0.2
99,289 - -2.9
99,549 + GFF5469 0.31 +0.0
99,549 + GFF5469 0.31 +0.2
99,550 - GFF5469 0.31 -0.4
99,550 - GFF5469 0.31 -0.1
99,550 - GFF5469 0.31 -0.1
99,550 - GFF5469 0.31 -0.1
99,576 + GFF5469 0.34 -0.3
99,576 + GFF5469 0.34 -0.5
99,577 - GFF5469 0.34 +0.6
99,577 - GFF5469 0.34 +0.0
99,606 + GFF5469 0.37 +0.2
99,606 + GFF5469 0.37 -2.1
99,606 + GFF5469 0.37 +0.1
99,606 + GFF5469 0.37 -1.4
99,607 - GFF5469 0.37 -0.4
99,607 - GFF5469 0.37 +0.8
99,607 - GFF5469 0.37 -1.3
99,607 - GFF5469 0.37 -1.8
99,607 - GFF5469 0.37 -0.6
99,607 - GFF5469 0.37 -0.1
99,732 + GFF5469 0.52 -0.3
99,732 + GFF5469 0.52 -1.4
99,732 + GFF5469 0.52 -0.6
99,732 + GFF5469 0.52 +0.3
99,733 - GFF5469 0.52 +1.3
99,733 - GFF5469 0.52 +1.7
99,733 - GFF5469 0.52 -0.8
99,733 - GFF5469 0.52 +0.2
99,733 - GFF5469 0.52 +0.3
99,733 - GFF5469 0.52 +0.2
99,733 - GFF5469 0.52 +0.3
99,733 - GFF5469 0.52 -0.1
99,733 - GFF5469 0.52 +1.3
99,972 + GFF5469 0.80 -0.3
99,972 + GFF5469 0.80 -0.8
99,972 + GFF5469 0.80 +1.3
99,972 + GFF5469 0.80 -0.5
99,972 + GFF5469 0.80 -2.1
99,972 + GFF5469 0.80 -0.3
99,973 - GFF5469 0.80 -1.0
99,973 - GFF5469 0.80 -0.1
99,973 - GFF5469 0.80 -1.1
99,973 - GFF5469 0.80 -0.4
99,973 - GFF5469 0.80 +0.2
99,973 - GFF5469 0.80 +0.1
99,973 - GFF5469 0.80 -0.3
99,973 - GFF5469 0.80 -0.8
99,973 - GFF5469 0.80 -0.9
99,973 - GFF5469 0.80 +0.2
99,973 - GFF5469 0.80 -0.4
99,973 - GFF5469 0.80 +2.0

Or see this region's nucleotide sequence