Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5385 and GFF5386 are separated by 13 nucleotides GFF5386 and GFF5387 are separated by 6 nucleotides GFF5387 and GFF5388 are separated by 37 nucleotides GFF5388 and GFF5389 are separated by 66 nucleotides
GFF5385 - Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15), at 12,646 to 13,458
GFF5385
GFF5386 - hypothetical protein, at 13,472 to 13,720
GFF5386
GFF5387 - Two-component system histidine kinase BP2548, at 13,727 to 15,169
GFF5387
GFF5388 - Two-component response regulatory protein BP2547, at 15,207 to 15,881
GFF5388
GFF5389 - Transcriptional regulator, MarR family, at 15,948 to 16,433
GFF5389
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.520 kb on + strand, within GFF5386 at 13.521 kb on - strand, within GFF5386 at 13.521 kb on - strand, within GFF5386 at 13.893 kb on + strand, within GFF5387 at 13.893 kb on + strand, within GFF5387 at 13.893 kb on + strand, within GFF5387 at 13.893 kb on + strand, within GFF5387 at 13.894 kb on - strand, within GFF5387 at 13.894 kb on - strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.136 kb on + strand, within GFF5387 at 14.137 kb on - strand, within GFF5387 at 14.137 kb on - strand, within GFF5387 at 14.137 kb on - strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.902 kb on - strand, within GFF5387 at 14.902 kb on - strand, within GFF5387 at 14.902 kb on - strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 15.232 kb on + strand at 15.232 kb on + strand at 15.232 kb on + strand at 15.232 kb on + strand at 15.233 kb on - strand at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.949 kb on + strand at 15.950 kb on - strand at 15.950 kb on - strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.981 kb on + strand at 15.981 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 13,520 + GFF5386 0.19 -0.3 13,521 - GFF5386 0.20 -0.4 13,521 - GFF5386 0.20 -0.1 13,893 + GFF5387 0.12 -2.2 13,893 + GFF5387 0.12 -0.1 13,893 + GFF5387 0.12 +0.5 13,893 + GFF5387 0.12 -0.9 13,894 - GFF5387 0.12 -0.4 13,894 - GFF5387 0.12 -0.2 14,037 + GFF5387 0.21 -0.5 14,037 + GFF5387 0.21 +1.8 14,037 + GFF5387 0.21 -1.1 14,037 + GFF5387 0.21 +0.2 14,037 + GFF5387 0.21 -0.2 14,037 + GFF5387 0.21 -0.4 14,038 - GFF5387 0.22 +0.8 14,038 - GFF5387 0.22 -0.4 14,038 - GFF5387 0.22 +0.7 14,038 - GFF5387 0.22 -0.9 14,038 - GFF5387 0.22 -1.9 14,038 - GFF5387 0.22 -0.5 14,038 - GFF5387 0.22 -0.6 14,038 - GFF5387 0.22 -0.1 14,038 - GFF5387 0.22 +0.0 14,136 + GFF5387 0.28 +0.4 14,137 - GFF5387 0.28 +0.9 14,137 - GFF5387 0.28 -0.2 14,137 - GFF5387 0.28 +0.7 14,901 + GFF5387 0.81 -0.3 14,901 + GFF5387 0.81 -0.8 14,901 + GFF5387 0.81 -0.6 14,901 + GFF5387 0.81 -0.1 14,901 + GFF5387 0.81 -0.7 14,901 + GFF5387 0.81 -0.2 14,901 + GFF5387 0.81 -1.2 14,902 - GFF5387 0.81 -0.5 14,902 - GFF5387 0.81 -0.2 14,902 - GFF5387 0.81 -1.4 14,904 + GFF5387 0.82 -0.9 14,904 + GFF5387 0.82 +1.6 14,904 + GFF5387 0.82 -0.2 14,904 + GFF5387 0.82 -0.2 14,904 + GFF5387 0.82 -0.1 14,904 + GFF5387 0.82 -0.3 14,904 + GFF5387 0.82 -0.9 14,904 + GFF5387 0.82 +0.3 14,905 - GFF5387 0.82 -0.8 14,905 - GFF5387 0.82 -1.0 14,905 - GFF5387 0.82 -2.8 14,905 - GFF5387 0.82 -0.4 14,905 - GFF5387 0.82 -0.8 14,905 - GFF5387 0.82 -0.1 14,905 - GFF5387 0.82 -0.4 14,905 - GFF5387 0.82 -0.4 14,905 - GFF5387 0.82 -0.7 14,905 - GFF5387 0.82 -1.2 14,968 + GFF5387 0.86 -0.0 14,968 + GFF5387 0.86 -0.2 14,968 + GFF5387 0.86 +1.0 14,968 + GFF5387 0.86 +0.3 14,968 + GFF5387 0.86 -0.3 14,968 + GFF5387 0.86 -0.6 14,968 + GFF5387 0.86 +0.4 14,968 + GFF5387 0.86 -1.7 14,969 - GFF5387 0.86 +0.2 14,969 - GFF5387 0.86 -1.4 14,969 - GFF5387 0.86 -0.3 14,969 - GFF5387 0.86 -0.3 14,969 - GFF5387 0.86 +2.0 14,969 - GFF5387 0.86 +0.4 14,969 - GFF5387 0.86 +0.9 14,969 - GFF5387 0.86 -0.3 14,969 - GFF5387 0.86 -1.6 15,232 + -0.3 15,232 + -0.5 15,232 + +0.2 15,232 + -0.6 15,233 - -1.0 15,301 + GFF5388 0.14 -0.7 15,301 + GFF5388 0.14 -0.6 15,301 + GFF5388 0.14 -0.4 15,301 + GFF5388 0.14 -0.8 15,301 + GFF5388 0.14 -0.4 15,301 + GFF5388 0.14 -0.1 15,301 + GFF5388 0.14 -0.6 15,301 + GFF5388 0.14 -1.2 15,301 + GFF5388 0.14 -1.8 15,301 + GFF5388 0.14 +0.7 15,301 + GFF5388 0.14 +0.2 15,301 + GFF5388 0.14 -0.3 15,301 + GFF5388 0.14 +1.4 15,301 + GFF5388 0.14 +0.1 15,301 + GFF5388 0.14 +0.2 15,301 + GFF5388 0.14 -0.5 15,301 + GFF5388 0.14 +0.2 15,301 + GFF5388 0.14 +0.2 15,301 + GFF5388 0.14 +1.3 15,301 + GFF5388 0.14 -1.2 15,301 + GFF5388 0.14 -0.4 15,301 + GFF5388 0.14 -0.1 15,302 - GFF5388 0.14 +0.1 15,302 - GFF5388 0.14 +1.6 15,302 - GFF5388 0.14 +0.7 15,302 - GFF5388 0.14 -0.7 15,302 - GFF5388 0.14 -0.6 15,302 - GFF5388 0.14 -0.4 15,302 - GFF5388 0.14 +0.1 15,302 - GFF5388 0.14 +0.1 15,302 - GFF5388 0.14 +2.0 15,302 - GFF5388 0.14 -1.7 15,302 - GFF5388 0.14 +0.1 15,302 - GFF5388 0.14 -0.1 15,302 - GFF5388 0.14 -0.4 15,302 - GFF5388 0.14 -0.3 15,302 - GFF5388 0.14 -1.4 15,302 - GFF5388 0.14 -0.8 15,302 - GFF5388 0.14 +0.0 15,478 + GFF5388 0.40 +1.7 15,478 + GFF5388 0.40 +0.5 15,478 + GFF5388 0.40 -0.6 15,478 + GFF5388 0.40 -0.3 15,479 - GFF5388 0.40 -0.1 15,479 - GFF5388 0.40 -1.2 15,479 - GFF5388 0.40 -0.3 15,479 - GFF5388 0.40 -0.5 15,586 + GFF5388 0.56 +0.3 15,586 + GFF5388 0.56 -0.1 15,586 + GFF5388 0.56 +2.0 15,586 + GFF5388 0.56 +0.2 15,586 + GFF5388 0.56 -0.7 15,586 + GFF5388 0.56 +0.4 15,586 + GFF5388 0.56 -1.3 15,586 + GFF5388 0.56 -1.3 15,586 + GFF5388 0.56 +0.5 15,586 + GFF5388 0.56 +0.0 15,586 + GFF5388 0.56 +0.1 15,586 + GFF5388 0.56 -1.4 15,586 + GFF5388 0.56 -1.6 15,586 + GFF5388 0.56 -1.1 15,586 + GFF5388 0.56 -0.1 15,586 + GFF5388 0.56 -1.2 15,586 + GFF5388 0.56 -0.1 15,586 + GFF5388 0.56 -0.6 15,586 + GFF5388 0.56 -0.4 15,586 + GFF5388 0.56 -0.5 15,587 - GFF5388 0.56 -0.2 15,587 - GFF5388 0.56 -0.7 15,587 - GFF5388 0.56 -0.1 15,587 - GFF5388 0.56 -0.7 15,587 - GFF5388 0.56 -1.3 15,587 - GFF5388 0.56 +2.0 15,587 - GFF5388 0.56 -0.3 15,587 - GFF5388 0.56 -0.1 15,587 - GFF5388 0.56 -0.9 15,587 - GFF5388 0.56 -1.3 15,587 - GFF5388 0.56 -1.1 15,587 - GFF5388 0.56 +2.0 15,587 - GFF5388 0.56 +0.7 15,587 - GFF5388 0.56 -0.3 15,587 - GFF5388 0.56 +1.0 15,587 - GFF5388 0.56 -0.0 15,587 - GFF5388 0.56 -0.9 15,587 - GFF5388 0.56 +0.7 15,587 - GFF5388 0.56 -0.1 15,949 + -1.7 15,950 - -0.6 15,950 - -0.9 15,959 + -0.2 15,959 + -0.8 15,959 + -0.8 15,959 + -0.2 15,959 + +1.2 15,959 + +0.4 15,959 + -0.3 15,959 + -0.6 15,959 + +0.2 15,959 + -0.2 15,959 + -0.3 15,959 + +0.1 15,960 - +0.2 15,960 - +0.2 15,960 - +0.5 15,960 - -0.5 15,960 - +0.7 15,960 - -1.0 15,961 + -0.6 15,961 + -1.7 15,961 + -0.4 15,961 + -0.1 15,961 + +0.1 15,961 + +0.7 15,961 + -0.1 15,961 + +0.3 15,961 + -0.7 15,961 + -1.2 15,961 + -1.6 15,961 + -0.0 15,961 + -0.5 15,961 + -0.2 15,962 - -0.3 15,962 - -1.6 15,962 - -0.2 15,962 - -0.4 15,962 - -0.3 15,962 - +0.0 15,962 - +0.6 15,962 - -0.6 15,962 - +0.4 15,962 - -0.7 15,981 + -0.6 15,981 + -0.7
Or see this region's nucleotide sequence