Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5378 and GFF5379 are separated by 92 nucleotides GFF5379 and GFF5380 are separated by 13 nucleotides GFF5380 and GFF5381 are separated by 111 nucleotides
GFF5378 - hypothetical protein, at 4,719 to 4,928
GFF5378
GFF5379 - Putative hydrolase, at 5,021 to 5,893
GFF5379
GFF5380 - BUG/TctC family periplasmic protein, at 5,907 to 6,869
GFF5380
GFF5381 - Transcriptional regulator, LysR family, at 6,981 to 7,919
GFF5381
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.941 kb on + strand at 4.941 kb on + strand at 4.941 kb on + strand at 4.941 kb on + strand at 4.942 kb on - strand at 4.942 kb on - strand at 4.942 kb on - strand at 4.942 kb on - strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.968 kb on + strand at 4.968 kb on + strand at 4.968 kb on + strand at 4.969 kb on - strand at 4.969 kb on - strand at 4.969 kb on - strand at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.124 kb on + strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.125 kb on - strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.208 kb on + strand, within GFF5379 at 5.209 kb on - strand, within GFF5379 at 5.209 kb on - strand, within GFF5379 at 5.209 kb on - strand, within GFF5379 at 5.209 kb on - strand, within GFF5379 at 5.209 kb on - strand, within GFF5379 at 5.209 kb on - strand, within GFF5379 at 5.209 kb on - strand, within GFF5379 at 5.209 kb on - strand, within GFF5379 at 5.209 kb on - strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.220 kb on + strand, within GFF5379 at 5.221 kb on - strand, within GFF5379 at 5.221 kb on - strand, within GFF5379 at 5.221 kb on - strand, within GFF5379 at 5.221 kb on - strand, within GFF5379 at 5.221 kb on - strand, within GFF5379 at 5.221 kb on - strand, within GFF5379 at 5.232 kb on + strand, within GFF5379 at 5.232 kb on + strand, within GFF5379 at 5.232 kb on + strand, within GFF5379 at 5.398 kb on - strand, within GFF5379 at 5.398 kb on - strand, within GFF5379 at 5.398 kb on - strand, within GFF5379 at 5.448 kb on + strand, within GFF5379 at 5.449 kb on - strand, within GFF5379 at 5.449 kb on - strand, within GFF5379 at 5.449 kb on - strand, within GFF5379 at 5.508 kb on + strand, within GFF5379 at 5.508 kb on + strand, within GFF5379 at 5.508 kb on + strand, within GFF5379 at 5.508 kb on + strand, within GFF5379 at 5.509 kb on - strand, within GFF5379 at 5.509 kb on - strand, within GFF5379 at 5.509 kb on - strand, within GFF5379 at 5.509 kb on - strand, within GFF5379 at 5.509 kb on - strand, within GFF5379 at 5.509 kb on - strand, within GFF5379 at 5.661 kb on + strand, within GFF5379 at 5.661 kb on + strand, within GFF5379 at 5.661 kb on + strand, within GFF5379 at 5.661 kb on + strand, within GFF5379 at 5.662 kb on - strand, within GFF5379 at 5.662 kb on - strand, within GFF5379 at 5.662 kb on - strand, within GFF5379 at 5.662 kb on - strand, within GFF5379 at 5.662 kb on - strand, within GFF5379 at 5.662 kb on - strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.718 kb on + strand, within GFF5379 at 5.719 kb on - strand, within GFF5379 at 5.719 kb on - strand, within GFF5379 at 5.719 kb on - strand, within GFF5379 at 5.719 kb on - strand, within GFF5379 at 5.719 kb on - strand, within GFF5379 at 5.719 kb on - strand, within GFF5379 at 5.719 kb on - strand, within GFF5379 at 5.719 kb on - strand, within GFF5379 at 5.794 kb on - strand, within GFF5379 at 5.893 kb on + strand at 5.893 kb on + strand at 5.893 kb on + strand at 5.893 kb on + strand at 5.893 kb on + strand at 5.893 kb on + strand at 5.894 kb on - strand at 5.894 kb on - strand at 5.894 kb on - strand at 5.894 kb on - strand at 6.007 kb on + strand, within GFF5380 at 6.007 kb on + strand, within GFF5380 at 6.008 kb on - strand, within GFF5380 at 6.152 kb on - strand, within GFF5380 at 6.166 kb on + strand, within GFF5380 at 6.166 kb on + strand, within GFF5380 at 6.166 kb on + strand, within GFF5380 at 6.166 kb on + strand, within GFF5380 at 6.166 kb on + strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.167 kb on - strand, within GFF5380 at 6.274 kb on + strand, within GFF5380 at 6.274 kb on + strand, within GFF5380 at 6.274 kb on + strand, within GFF5380 at 6.274 kb on + strand, within GFF5380 at 6.275 kb on - strand, within GFF5380 at 6.275 kb on - strand, within GFF5380 at 6.275 kb on - strand, within GFF5380 at 6.275 kb on - strand, within GFF5380 at 6.275 kb on - strand, within GFF5380 at 6.329 kb on - strand, within GFF5380 at 6.415 kb on + strand, within GFF5380 at 6.415 kb on + strand, within GFF5380 at 6.415 kb on + strand, within GFF5380 at 6.416 kb on - strand, within GFF5380 at 6.416 kb on - strand, within GFF5380 at 6.416 kb on - strand, within GFF5380 at 6.416 kb on - strand, within GFF5380 at 6.416 kb on - strand, within GFF5380 at 6.445 kb on + strand, within GFF5380 at 6.445 kb on + strand, within GFF5380 at 6.445 kb on + strand, within GFF5380 at 6.445 kb on + strand, within GFF5380 at 6.445 kb on + strand, within GFF5380 at 6.445 kb on + strand, within GFF5380 at 6.446 kb on - strand, within GFF5380 at 6.446 kb on - strand, within GFF5380 at 6.446 kb on - strand, within GFF5380 at 6.446 kb on - strand, within GFF5380 at 6.446 kb on - strand, within GFF5380 at 6.446 kb on - strand, within GFF5380 at 6.446 kb on - strand, within GFF5380 at 6.446 kb on - strand, within GFF5380 at 6.446 kb on - strand, within GFF5380 at 6.556 kb on + strand, within GFF5380 at 6.556 kb on + strand, within GFF5380 at 6.557 kb on - strand, within GFF5380 at 6.557 kb on - strand, within GFF5380 at 6.557 kb on - strand, within GFF5380 at 6.571 kb on + strand, within GFF5380 at 6.572 kb on - strand, within GFF5380 at 6.814 kb on - strand at 6.827 kb on + strand at 6.827 kb on + strand at 6.827 kb on + strand at 6.828 kb on - strand at 6.923 kb on + strand at 6.933 kb on + strand at 6.933 kb on + strand at 6.934 kb on - strand at 6.934 kb on - strand at 6.934 kb on - strand at 6.935 kb on + strand at 6.936 kb on - strand at 6.936 kb on - strand at 6.965 kb on + strand at 6.966 kb on - strand at 6.966 kb on - strand at 7.192 kb on - strand, within GFF5381 at 7.192 kb on - strand, within GFF5381 at 7.389 kb on + strand, within GFF5381 at 7.389 kb on + strand, within GFF5381 at 7.389 kb on + strand, within GFF5381 at 7.390 kb on - strand, within GFF5381 at 7.390 kb on - strand, within GFF5381 at 7.390 kb on - strand, within GFF5381 at 7.390 kb on - strand, within GFF5381 at 7.464 kb on + strand, within GFF5381 at 7.464 kb on + strand, within GFF5381 at 7.464 kb on + strand, within GFF5381 at 7.464 kb on + strand, within GFF5381 at 7.464 kb on + strand, within GFF5381 at 7.464 kb on + strand, within GFF5381 at 7.465 kb on - strand, within GFF5381 at 7.465 kb on - strand, within GFF5381 at 7.791 kb on + strand, within GFF5381 at 7.791 kb on + strand, within GFF5381 at 7.792 kb on - strand, within GFF5381 at 7.792 kb on - strand, within GFF5381
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 4,941 + -0.2 4,941 + +0.6 4,941 + -0.2 4,941 + +0.2 4,942 - -0.2 4,942 - -0.1 4,942 - +1.2 4,942 - -0.4 4,943 + +0.4 4,943 + +0.8 4,943 + -0.0 4,943 + -0.9 4,943 + +0.4 4,943 + -0.1 4,943 + +1.4 4,943 + -1.5 4,943 + -1.4 4,943 + +0.7 4,943 + -0.3 4,943 + -0.4 4,943 + -0.1 4,943 + -0.6 4,944 - +0.7 4,944 - +0.1 4,944 - -0.6 4,944 - -0.1 4,944 - -0.4 4,944 - -0.6 4,944 - -0.2 4,944 - +1.0 4,968 + +1.2 4,968 + +0.3 4,968 + +0.4 4,969 - -0.8 4,969 - -0.4 4,969 - +0.7 5,124 + GFF5379 0.12 -0.9 5,124 + GFF5379 0.12 -0.4 5,124 + GFF5379 0.12 -0.3 5,124 + GFF5379 0.12 +1.5 5,124 + GFF5379 0.12 -1.1 5,124 + GFF5379 0.12 -0.2 5,124 + GFF5379 0.12 -0.1 5,124 + GFF5379 0.12 -0.5 5,124 + GFF5379 0.12 +0.1 5,124 + GFF5379 0.12 -0.3 5,124 + GFF5379 0.12 +0.6 5,124 + GFF5379 0.12 +0.7 5,124 + GFF5379 0.12 -0.2 5,125 - GFF5379 0.12 -0.9 5,125 - GFF5379 0.12 -0.2 5,125 - GFF5379 0.12 +0.3 5,125 - GFF5379 0.12 -0.6 5,125 - GFF5379 0.12 -0.6 5,125 - GFF5379 0.12 -0.8 5,125 - GFF5379 0.12 +0.3 5,125 - GFF5379 0.12 -0.8 5,125 - GFF5379 0.12 -1.3 5,125 - GFF5379 0.12 +1.4 5,125 - GFF5379 0.12 +1.2 5,208 + GFF5379 0.21 -1.3 5,208 + GFF5379 0.21 +0.0 5,208 + GFF5379 0.21 +0.4 5,208 + GFF5379 0.21 -0.1 5,208 + GFF5379 0.21 +2.6 5,208 + GFF5379 0.21 -0.3 5,208 + GFF5379 0.21 -0.1 5,208 + GFF5379 0.21 -0.4 5,208 + GFF5379 0.21 -0.1 5,208 + GFF5379 0.21 +0.3 5,208 + GFF5379 0.21 -0.8 5,208 + GFF5379 0.21 -0.4 5,209 - GFF5379 0.22 +0.0 5,209 - GFF5379 0.22 +0.0 5,209 - GFF5379 0.22 -0.3 5,209 - GFF5379 0.22 +0.5 5,209 - GFF5379 0.22 +0.9 5,209 - GFF5379 0.22 +1.7 5,209 - GFF5379 0.22 -0.2 5,209 - GFF5379 0.22 +1.0 5,209 - GFF5379 0.22 +0.9 5,220 + GFF5379 0.23 -1.3 5,220 + GFF5379 0.23 +0.4 5,220 + GFF5379 0.23 +2.0 5,220 + GFF5379 0.23 -0.1 5,220 + GFF5379 0.23 +1.4 5,220 + GFF5379 0.23 -0.4 5,220 + GFF5379 0.23 +0.6 5,220 + GFF5379 0.23 +0.2 5,220 + GFF5379 0.23 +0.2 5,220 + GFF5379 0.23 +1.8 5,220 + GFF5379 0.23 +1.1 5,220 + GFF5379 0.23 -0.9 5,221 - GFF5379 0.23 -0.7 5,221 - GFF5379 0.23 -2.1 5,221 - GFF5379 0.23 -1.3 5,221 - GFF5379 0.23 -0.8 5,221 - GFF5379 0.23 -0.7 5,221 - GFF5379 0.23 +0.9 5,232 + GFF5379 0.24 +0.2 5,232 + GFF5379 0.24 -0.4 5,232 + GFF5379 0.24 -0.3 5,398 - GFF5379 0.43 -0.4 5,398 - GFF5379 0.43 -0.2 5,398 - GFF5379 0.43 -1.1 5,448 + GFF5379 0.49 +0.8 5,449 - GFF5379 0.49 -0.4 5,449 - GFF5379 0.49 -2.8 5,449 - GFF5379 0.49 -1.4 5,508 + GFF5379 0.56 -0.5 5,508 + GFF5379 0.56 -0.3 5,508 + GFF5379 0.56 -0.6 5,508 + GFF5379 0.56 +1.0 5,509 - GFF5379 0.56 -1.0 5,509 - GFF5379 0.56 -1.1 5,509 - GFF5379 0.56 -0.2 5,509 - GFF5379 0.56 -2.1 5,509 - GFF5379 0.56 -0.8 5,509 - GFF5379 0.56 +0.0 5,661 + GFF5379 0.73 -1.5 5,661 + GFF5379 0.73 +0.2 5,661 + GFF5379 0.73 +0.4 5,661 + GFF5379 0.73 -0.9 5,662 - GFF5379 0.73 -1.4 5,662 - GFF5379 0.73 -0.8 5,662 - GFF5379 0.73 -0.3 5,662 - GFF5379 0.73 +1.0 5,662 - GFF5379 0.73 -1.1 5,662 - GFF5379 0.73 -0.0 5,718 + GFF5379 0.80 -0.1 5,718 + GFF5379 0.80 +0.2 5,718 + GFF5379 0.80 -0.2 5,718 + GFF5379 0.80 +0.4 5,718 + GFF5379 0.80 +0.4 5,718 + GFF5379 0.80 -0.3 5,718 + GFF5379 0.80 +0.4 5,718 + GFF5379 0.80 -1.1 5,718 + GFF5379 0.80 -0.5 5,718 + GFF5379 0.80 -0.7 5,718 + GFF5379 0.80 +0.0 5,718 + GFF5379 0.80 -0.0 5,718 + GFF5379 0.80 +0.3 5,719 - GFF5379 0.80 -0.1 5,719 - GFF5379 0.80 +0.2 5,719 - GFF5379 0.80 -0.7 5,719 - GFF5379 0.80 -0.5 5,719 - GFF5379 0.80 -0.7 5,719 - GFF5379 0.80 -0.2 5,719 - GFF5379 0.80 -0.4 5,719 - GFF5379 0.80 +1.4 5,794 - GFF5379 0.89 +2.0 5,893 + -0.8 5,893 + +0.6 5,893 + +0.4 5,893 + -0.1 5,893 + -0.2 5,893 + -1.1 5,894 - -0.1 5,894 - -0.6 5,894 - -0.4 5,894 - +0.3 6,007 + GFF5380 0.10 -0.2 6,007 + GFF5380 0.10 -0.0 6,008 - GFF5380 0.10 -1.4 6,152 - GFF5380 0.25 +0.1 6,166 + GFF5380 0.27 +1.2 6,166 + GFF5380 0.27 -0.4 6,166 + GFF5380 0.27 +0.0 6,166 + GFF5380 0.27 -1.2 6,166 + GFF5380 0.27 -0.2 6,167 - GFF5380 0.27 -0.6 6,167 - GFF5380 0.27 -1.0 6,167 - GFF5380 0.27 +0.0 6,167 - GFF5380 0.27 -0.4 6,167 - GFF5380 0.27 +0.4 6,167 - GFF5380 0.27 +0.0 6,167 - GFF5380 0.27 -0.1 6,167 - GFF5380 0.27 +0.4 6,167 - GFF5380 0.27 +0.8 6,167 - GFF5380 0.27 +2.0 6,167 - GFF5380 0.27 -0.3 6,167 - GFF5380 0.27 +0.4 6,167 - GFF5380 0.27 +1.6 6,167 - GFF5380 0.27 -1.0 6,167 - GFF5380 0.27 -0.4 6,167 - GFF5380 0.27 -0.3 6,167 - GFF5380 0.27 -0.8 6,274 + GFF5380 0.38 +0.7 6,274 + GFF5380 0.38 +0.9 6,274 + GFF5380 0.38 +1.0 6,274 + GFF5380 0.38 -0.6 6,275 - GFF5380 0.38 +0.2 6,275 - GFF5380 0.38 -0.0 6,275 - GFF5380 0.38 -0.7 6,275 - GFF5380 0.38 +0.8 6,275 - GFF5380 0.38 -1.2 6,329 - GFF5380 0.44 -0.3 6,415 + GFF5380 0.53 -2.5 6,415 + GFF5380 0.53 -0.8 6,415 + GFF5380 0.53 +1.8 6,416 - GFF5380 0.53 -0.3 6,416 - GFF5380 0.53 +1.3 6,416 - GFF5380 0.53 -1.3 6,416 - GFF5380 0.53 +0.7 6,416 - GFF5380 0.53 -0.6 6,445 + GFF5380 0.56 +0.4 6,445 + GFF5380 0.56 +0.0 6,445 + GFF5380 0.56 -0.2 6,445 + GFF5380 0.56 +0.4 6,445 + GFF5380 0.56 +1.2 6,445 + GFF5380 0.56 -1.3 6,446 - GFF5380 0.56 +0.5 6,446 - GFF5380 0.56 +2.6 6,446 - GFF5380 0.56 +0.4 6,446 - GFF5380 0.56 -0.6 6,446 - GFF5380 0.56 -0.7 6,446 - GFF5380 0.56 -0.3 6,446 - GFF5380 0.56 +1.5 6,446 - GFF5380 0.56 +0.4 6,446 - GFF5380 0.56 +0.1 6,556 + GFF5380 0.67 +0.2 6,556 + GFF5380 0.67 -0.6 6,557 - GFF5380 0.67 +0.1 6,557 - GFF5380 0.67 +0.4 6,557 - GFF5380 0.67 -0.4 6,571 + GFF5380 0.69 +0.5 6,572 - GFF5380 0.69 -0.5 6,814 - -0.6 6,827 + +0.8 6,827 + -1.1 6,827 + -0.4 6,828 - -0.3 6,923 + -0.1 6,933 + -0.6 6,933 + -0.5 6,934 - -0.2 6,934 - +0.5 6,934 - -1.7 6,935 + -0.9 6,936 - -1.1 6,936 - +0.4 6,965 + +1.0 6,966 - -1.3 6,966 - -0.6 7,192 - GFF5381 0.22 -0.8 7,192 - GFF5381 0.22 -0.3 7,389 + GFF5381 0.43 -0.0 7,389 + GFF5381 0.43 +0.3 7,389 + GFF5381 0.43 +1.4 7,390 - GFF5381 0.44 -0.4 7,390 - GFF5381 0.44 -0.7 7,390 - GFF5381 0.44 -0.1 7,390 - GFF5381 0.44 +2.0 7,464 + GFF5381 0.51 -1.0 7,464 + GFF5381 0.51 -1.1 7,464 + GFF5381 0.51 -2.5 7,464 + GFF5381 0.51 +0.9 7,464 + GFF5381 0.51 -0.0 7,464 + GFF5381 0.51 -0.4 7,465 - GFF5381 0.52 +0.2 7,465 - GFF5381 0.52 +0.2 7,791 + GFF5381 0.86 +0.1 7,791 + GFF5381 0.86 -0.2 7,792 - GFF5381 0.86 +0.4 7,792 - GFF5381 0.86 -0.3
Or see this region's nucleotide sequence