Strain Fitness in Variovorax sp. SCN45 around GFF5373

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5373 and GFF5374 are separated by 86 nucleotides GFF5373 - Xylose isomerase-like TIM-barrel protein KPN_00539, at 45 to 452 GFF5373 GFF5374 - Glutamine amidotransferase, class I, at 539 to 1,483 GFF5374 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2at 0.046 kb on + strandat 0.046 kb on + strandat 0.046 kb on + strandat 0.046 kb on + strandat 0.088 kb on + strand, within GFF5373at 0.088 kb on + strand, within GFF5373at 0.088 kb on + strand, within GFF5373at 0.175 kb on + strand, within GFF5373at 0.175 kb on + strand, within GFF5373at 0.175 kb on + strand, within GFF5373at 0.176 kb on - strand, within GFF5373at 0.176 kb on - strand, within GFF5373at 0.176 kb on - strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.800 kb on + strand, within GFF5374at 0.800 kb on + strand, within GFF5374at 0.801 kb on - strand, within GFF5374at 0.801 kb on - strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.914 kb on + strand, within GFF5374at 0.914 kb on + strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.017 kb on - strand, within GFF5374at 1.017 kb on - strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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46 + -0.1
46 + +0.0
46 + +0.7
46 + -1.8
88 + GFF5373 0.11 +0.2
88 + GFF5373 0.11 +0.1
88 + GFF5373 0.11 +0.2
175 + GFF5373 0.32 +0.5
175 + GFF5373 0.32 -2.1
175 + GFF5373 0.32 -0.1
176 - GFF5373 0.32 +0.0
176 - GFF5373 0.32 -0.3
176 - GFF5373 0.32 +0.1
274 + GFF5373 0.56 -0.5
274 + GFF5373 0.56 -0.8
274 + GFF5373 0.56 +0.6
274 + GFF5373 0.56 -0.2
274 + GFF5373 0.56 -1.8
274 + GFF5373 0.56 +0.1
275 - GFF5373 0.56 -0.6
275 - GFF5373 0.56 -0.1
275 - GFF5373 0.56 -0.9
275 - GFF5373 0.56 +0.0
275 - GFF5373 0.56 +1.1
275 - GFF5373 0.56 +2.0
275 - GFF5373 0.56 -0.8
275 - GFF5373 0.56 +0.3
275 - GFF5373 0.56 +0.9
275 - GFF5373 0.56 -1.5
275 - GFF5373 0.56 +0.5
346 + GFF5373 0.74 +0.9
346 + GFF5373 0.74 -0.6
346 + GFF5373 0.74 +0.8
346 + GFF5373 0.74 -0.6
346 + GFF5373 0.74 -0.1
346 + GFF5373 0.74 +0.3
346 + GFF5373 0.74 -0.1
347 - GFF5373 0.74 -0.3
347 - GFF5373 0.74 -0.1
347 - GFF5373 0.74 +2.0
347 - GFF5373 0.74 +0.4
347 - GFF5373 0.74 +0.5
493 + -0.4
493 + +0.8
493 + -1.3
493 + +0.9
493 + -0.8
493 + -0.2
493 + -0.3
493 + +0.8
493 + +0.3
494 - +1.2
494 - -0.4
494 - -2.4
494 - -1.2
494 - +0.5
494 - -0.9
494 - +0.4
692 + GFF5374 0.16 -1.8
692 + GFF5374 0.16 -0.2
692 + GFF5374 0.16 -0.3
692 + GFF5374 0.16 -2.2
692 + GFF5374 0.16 -1.0
692 + GFF5374 0.16 +1.0
692 + GFF5374 0.16 +2.0
692 + GFF5374 0.16 +1.3
692 + GFF5374 0.16 -0.4
693 - GFF5374 0.16 +0.5
693 - GFF5374 0.16 +0.3
693 - GFF5374 0.16 -1.4
693 - GFF5374 0.16 -1.0
800 + GFF5374 0.28 +0.1
800 + GFF5374 0.28 +0.2
801 - GFF5374 0.28 +0.7
801 - GFF5374 0.28 +0.3
860 + GFF5374 0.34 +1.2
860 + GFF5374 0.34 -0.4
860 + GFF5374 0.34 -0.4
860 + GFF5374 0.34 +2.4
861 - GFF5374 0.34 -0.5
861 - GFF5374 0.34 +1.0
861 - GFF5374 0.34 -1.2
861 - GFF5374 0.34 +0.2
861 - GFF5374 0.34 +0.5
861 - GFF5374 0.34 -0.4
861 - GFF5374 0.34 -0.6
914 + GFF5374 0.40 -1.0
914 + GFF5374 0.40 -0.7
915 - GFF5374 0.40 +0.2
915 - GFF5374 0.40 -0.5
915 - GFF5374 0.40 -0.1
915 - GFF5374 0.40 -0.9
915 - GFF5374 0.40 -0.9
1,016 + GFF5374 0.50 +0.8
1,016 + GFF5374 0.50 +0.7
1,016 + GFF5374 0.50 -0.1
1,016 + GFF5374 0.50 -0.5
1,016 + GFF5374 0.50 -2.5
1,016 + GFF5374 0.50 +1.1
1,017 - GFF5374 0.51 -0.1
1,017 - GFF5374 0.51 -0.4
1,079 + GFF5374 0.57 -0.6
1,079 + GFF5374 0.57 +1.0
1,079 + GFF5374 0.57 -0.9
1,079 + GFF5374 0.57 -0.7
1,079 + GFF5374 0.57 -0.3
1,079 + GFF5374 0.57 +0.4
1,079 + GFF5374 0.57 +0.2
1,079 + GFF5374 0.57 +0.7
1,080 - GFF5374 0.57 +0.2
1,080 - GFF5374 0.57 +0.1
1,080 - GFF5374 0.57 -0.3
1,080 - GFF5374 0.57 -1.6
1,080 - GFF5374 0.57 +0.1
1,080 - GFF5374 0.57 +1.4
1,137 - GFF5374 0.63 -0.3
1,137 - GFF5374 0.63 -0.8
1,137 - GFF5374 0.63 +0.3
1,137 - GFF5374 0.63 -0.1
1,280 + GFF5374 0.78 -0.3
1,280 + GFF5374 0.78 -0.3
1,280 + GFF5374 0.78 -0.0
1,280 + GFF5374 0.78 -0.3
1,280 + GFF5374 0.78 -0.3
1,280 + GFF5374 0.78 -0.3
1,280 + GFF5374 0.78 +1.0
1,280 + GFF5374 0.78 -0.2
1,280 + GFF5374 0.78 +1.1
1,280 + GFF5374 0.78 +2.0
1,281 - GFF5374 0.79 -0.6
1,281 - GFF5374 0.79 -0.1
1,281 - GFF5374 0.79 -0.6
1,281 - GFF5374 0.79 -0.2
1,281 - GFF5374 0.79 -0.3
1,319 + GFF5374 0.83 -0.2
1,319 + GFF5374 0.83 -1.6
1,319 + GFF5374 0.83 -0.3
1,319 + GFF5374 0.83 -1.1
1,319 + GFF5374 0.83 -1.0
1,320 - GFF5374 0.83 -0.3
1,320 - GFF5374 0.83 -0.1
1,320 - GFF5374 0.83 -0.6
1,320 - GFF5374 0.83 -0.2
1,320 - GFF5374 0.83 -1.0

Or see this region's nucleotide sequence