Strain Fitness in Variovorax sp. SCN45 around GFF5327

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5326 and GFF5327 overlap by 4 nucleotidesGFF5327 and GFF5328 overlap by 4 nucleotidesGFF5328 and GFF5329 overlap by 4 nucleotides GFF5326 - Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), at 203,553 to 204,683 GFF5326 GFF5327 - Uncharacterized MFS-type transporter, at 204,680 to 205,936 GFF5327 GFF5328 - FIG00537720: hypothetical protein, at 205,933 to 206,508 GFF5328 GFF5329 - SAM-dependent methyltransferase, at 206,505 to 207,389 GFF5329 Position (kb) 204 205 206Strain fitness (log2 ratio) -2 -1 0 1 2 3at 203.692 kb on - strand, within GFF5326at 203.971 kb on - strand, within GFF5326at 203.971 kb on - strand, within GFF5326at 203.971 kb on - strand, within GFF5326at 204.062 kb on + strand, within GFF5326at 204.063 kb on - strand, within GFF5326at 204.144 kb on + strand, within GFF5326at 204.144 kb on + strand, within GFF5326at 204.145 kb on - strand, within GFF5326at 204.282 kb on + strand, within GFF5326at 204.282 kb on + strand, within GFF5326at 204.282 kb on + strand, within GFF5326at 204.283 kb on - strand, within GFF5326at 204.283 kb on - strand, within GFF5326at 204.283 kb on - strand, within GFF5326at 204.318 kb on + strand, within GFF5326at 204.318 kb on + strand, within GFF5326at 204.319 kb on - strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.571 kb on - strandat 204.571 kb on - strandat 204.571 kb on - strandat 204.609 kb on + strandat 204.609 kb on + strandat 204.610 kb on - strandat 204.610 kb on - strandat 204.610 kb on - strandat 204.931 kb on + strand, within GFF5327at 204.931 kb on + strand, within GFF5327at 204.931 kb on + strand, within GFF5327at 204.931 kb on + strand, within GFF5327at 204.932 kb on - strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.380 kb on - strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.425 kb on - strand, within GFF5327at 205.425 kb on - strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 206.062 kb on + strand, within GFF5328at 206.062 kb on + strand, within GFF5328at 206.071 kb on + strand, within GFF5328at 206.071 kb on + strand, within GFF5328at 206.071 kb on + strand, within GFF5328at 206.072 kb on - strand, within GFF5328at 206.347 kb on + strand, within GFF5328at 206.348 kb on - strand, within GFF5328at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.773 kb on - strand, within GFF5329at 206.773 kb on - strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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203,692 - GFF5326 0.12 -0.1
203,971 - GFF5326 0.37 +0.5
203,971 - GFF5326 0.37 -0.1
203,971 - GFF5326 0.37 +0.2
204,062 + GFF5326 0.45 +0.2
204,063 - GFF5326 0.45 -0.8
204,144 + GFF5326 0.52 +2.1
204,144 + GFF5326 0.52 +0.2
204,145 - GFF5326 0.52 +0.2
204,282 + GFF5326 0.64 +0.2
204,282 + GFF5326 0.64 -0.9
204,282 + GFF5326 0.64 +0.5
204,283 - GFF5326 0.65 +0.5
204,283 - GFF5326 0.65 +0.0
204,283 - GFF5326 0.65 +1.2
204,318 + GFF5326 0.68 +0.8
204,318 + GFF5326 0.68 +0.2
204,319 - GFF5326 0.68 +0.2
204,537 + GFF5326 0.87 +0.2
204,537 + GFF5326 0.87 -0.0
204,537 + GFF5326 0.87 -1.8
204,537 + GFF5326 0.87 -0.8
204,537 + GFF5326 0.87 -0.2
204,538 - GFF5326 0.87 -0.5
204,538 - GFF5326 0.87 -0.1
204,538 - GFF5326 0.87 +1.3
204,538 - GFF5326 0.87 +0.0
204,571 - +1.6
204,571 - +0.3
204,571 - +0.4
204,609 + +0.1
204,609 + +1.2
204,610 - -0.8
204,610 - -0.6
204,610 - +0.7
204,931 + GFF5327 0.20 +0.8
204,931 + GFF5327 0.20 +0.1
204,931 + GFF5327 0.20 -0.3
204,931 + GFF5327 0.20 -0.3
204,932 - GFF5327 0.20 +1.0
205,008 + GFF5327 0.26 +0.0
205,008 + GFF5327 0.26 -0.5
205,008 + GFF5327 0.26 +0.0
205,008 + GFF5327 0.26 +0.8
205,008 + GFF5327 0.26 +1.3
205,008 + GFF5327 0.26 +0.7
205,009 - GFF5327 0.26 -1.1
205,009 - GFF5327 0.26 -0.6
205,009 - GFF5327 0.26 -1.3
205,130 + GFF5327 0.36 -2.3
205,130 + GFF5327 0.36 +1.8
205,130 + GFF5327 0.36 -0.2
205,130 + GFF5327 0.36 +0.2
205,130 + GFF5327 0.36 +0.8
205,130 + GFF5327 0.36 +0.2
205,130 + GFF5327 0.36 -1.3
205,130 + GFF5327 0.36 -0.1
205,130 + GFF5327 0.36 +0.8
205,130 + GFF5327 0.36 -2.3
205,130 + GFF5327 0.36 -0.4
205,130 + GFF5327 0.36 -1.4
205,130 + GFF5327 0.36 -0.2
205,130 + GFF5327 0.36 +1.4
205,130 + GFF5327 0.36 -2.1
205,130 + GFF5327 0.36 +0.2
205,130 + GFF5327 0.36 +1.4
205,130 + GFF5327 0.36 -1.2
205,130 + GFF5327 0.36 +1.2
205,130 + GFF5327 0.36 -0.7
205,130 + GFF5327 0.36 -0.3
205,130 + GFF5327 0.36 +0.0
205,130 + GFF5327 0.36 -1.0
205,130 + GFF5327 0.36 -0.1
205,130 + GFF5327 0.36 +0.7
205,130 + GFF5327 0.36 -0.4
205,130 + GFF5327 0.36 -0.5
205,131 - GFF5327 0.36 +0.4
205,131 - GFF5327 0.36 +0.2
205,131 - GFF5327 0.36 -0.4
205,131 - GFF5327 0.36 -0.4
205,131 - GFF5327 0.36 -0.3
205,131 - GFF5327 0.36 -0.8
205,131 - GFF5327 0.36 -0.5
205,131 - GFF5327 0.36 +0.5
205,131 - GFF5327 0.36 +0.7
205,131 - GFF5327 0.36 -0.2
205,131 - GFF5327 0.36 +1.5
205,131 - GFF5327 0.36 -0.6
205,131 - GFF5327 0.36 -0.2
205,131 - GFF5327 0.36 -0.2
205,131 - GFF5327 0.36 +0.3
205,131 - GFF5327 0.36 -1.3
205,131 - GFF5327 0.36 -1.8
205,131 - GFF5327 0.36 +0.3
205,131 - GFF5327 0.36 -0.4
205,131 - GFF5327 0.36 -0.5
205,131 - GFF5327 0.36 -0.0
205,379 + GFF5327 0.56 +3.2
205,379 + GFF5327 0.56 -0.2
205,379 + GFF5327 0.56 -0.1
205,379 + GFF5327 0.56 +0.5
205,380 - GFF5327 0.56 +0.6
205,424 + GFF5327 0.59 +0.3
205,424 + GFF5327 0.59 +0.1
205,424 + GFF5327 0.59 +0.1
205,424 + GFF5327 0.59 +0.1
205,424 + GFF5327 0.59 -0.4
205,424 + GFF5327 0.59 +0.8
205,424 + GFF5327 0.59 +0.2
205,424 + GFF5327 0.59 +0.5
205,424 + GFF5327 0.59 +0.1
205,424 + GFF5327 0.59 -0.8
205,425 - GFF5327 0.59 +0.8
205,425 - GFF5327 0.59 +1.1
205,649 + GFF5327 0.77 +2.8
205,649 + GFF5327 0.77 -0.8
205,649 + GFF5327 0.77 -1.0
205,649 + GFF5327 0.77 +0.3
205,649 + GFF5327 0.77 -0.3
205,650 - GFF5327 0.77 +0.8
205,650 - GFF5327 0.77 +0.2
205,650 - GFF5327 0.77 -1.6
206,062 + GFF5328 0.22 -0.5
206,062 + GFF5328 0.22 -0.2
206,071 + GFF5328 0.24 -0.2
206,071 + GFF5328 0.24 -1.2
206,071 + GFF5328 0.24 -1.0
206,072 - GFF5328 0.24 +0.7
206,347 + GFF5328 0.72 -0.7
206,348 - GFF5328 0.72 +0.8
206,679 + GFF5329 0.20 +0.4
206,679 + GFF5329 0.20 +0.2
206,679 + GFF5329 0.20 -0.6
206,679 + GFF5329 0.20 -0.8
206,679 + GFF5329 0.20 +0.0
206,679 + GFF5329 0.20 -0.0
206,679 + GFF5329 0.20 +0.1
206,679 + GFF5329 0.20 +0.6
206,679 + GFF5329 0.20 -0.1
206,679 + GFF5329 0.20 +1.1
206,679 + GFF5329 0.20 -0.6
206,679 + GFF5329 0.20 -0.0
206,679 + GFF5329 0.20 -0.1
206,679 + GFF5329 0.20 +0.8
206,680 - GFF5329 0.20 -2.3
206,680 - GFF5329 0.20 -0.5
206,680 - GFF5329 0.20 +0.2
206,680 - GFF5329 0.20 -0.5
206,680 - GFF5329 0.20 +1.6
206,680 - GFF5329 0.20 -0.2
206,680 - GFF5329 0.20 -2.0
206,680 - GFF5329 0.20 -0.9
206,680 - GFF5329 0.20 +0.2
206,680 - GFF5329 0.20 -0.9
206,680 - GFF5329 0.20 -0.6
206,680 - GFF5329 0.20 +1.5
206,772 + GFF5329 0.30 -0.6
206,772 + GFF5329 0.30 -0.2
206,772 + GFF5329 0.30 -0.4
206,773 - GFF5329 0.30 +0.3
206,773 - GFF5329 0.30 -0.5
206,790 + GFF5329 0.32 -0.5
206,790 + GFF5329 0.32 +0.1
206,790 + GFF5329 0.32 -0.0
206,790 + GFF5329 0.32 +0.8
206,790 + GFF5329 0.32 +0.8
206,790 + GFF5329 0.32 -1.9
206,790 + GFF5329 0.32 -0.8
206,790 + GFF5329 0.32 -0.3
206,790 + GFF5329 0.32 +0.0
206,790 + GFF5329 0.32 +1.6
206,790 + GFF5329 0.32 -0.6
206,790 + GFF5329 0.32 +0.3
206,790 + GFF5329 0.32 +0.5
206,790 + GFF5329 0.32 -1.5
206,790 + GFF5329 0.32 +0.1
206,790 + GFF5329 0.32 -0.3
206,790 + GFF5329 0.32 -0.7
206,790 + GFF5329 0.32 +0.8
206,790 + GFF5329 0.32 +0.0
206,790 + GFF5329 0.32 +0.0
206,791 - GFF5329 0.32 +0.5
206,791 - GFF5329 0.32 -0.8
206,791 - GFF5329 0.32 -2.6
206,791 - GFF5329 0.32 -0.9
206,791 - GFF5329 0.32 -0.3
206,791 - GFF5329 0.32 +0.1
206,791 - GFF5329 0.32 +1.4
206,791 - GFF5329 0.32 -0.6
206,791 - GFF5329 0.32 +0.0
206,791 - GFF5329 0.32 -0.3
206,791 - GFF5329 0.32 +0.5
206,791 - GFF5329 0.32 -0.3
206,791 - GFF5329 0.32 +0.5
206,791 - GFF5329 0.32 -1.0
206,791 - GFF5329 0.32 -0.5
206,791 - GFF5329 0.32 -0.3
206,791 - GFF5329 0.32 -0.2
206,791 - GFF5329 0.32 +0.1
206,791 - GFF5329 0.32 -0.2
206,791 - GFF5329 0.32 -0.4
206,791 - GFF5329 0.32 -0.0
206,791 - GFF5329 0.32 -1.4
206,791 - GFF5329 0.32 +1.2
206,791 - GFF5329 0.32 -0.3
206,829 + GFF5329 0.37 +0.8
206,829 + GFF5329 0.37 -0.9
206,829 + GFF5329 0.37 -1.5
206,829 + GFF5329 0.37 +0.9
206,830 - GFF5329 0.37 +0.1
206,830 - GFF5329 0.37 -0.1
206,830 - GFF5329 0.37 -0.3
206,830 - GFF5329 0.37 -1.4
206,830 - GFF5329 0.37 +0.8
206,830 - GFF5329 0.37 -1.2
206,830 - GFF5329 0.37 -0.4

Or see this region's nucleotide sequence