Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5256 and GFF5257 overlap by 4 nucleotides GFF5257 and GFF5258 are separated by 94 nucleotides GFF5258 and GFF5259 overlap by 1 nucleotides
GFF5256 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 121,476 to 122,546
GFF5256
GFF5257 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 122,543 to 123,580
GFF5257
GFF5258 - hypothetical protein, at 123,675 to 123,854
GFF5258
GFF5259 - Na+/solute symporter, at 123,854 to 125,359
GFF5259
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 121.791 kb on + strand, within GFF5256 at 121.791 kb on + strand, within GFF5256 at 121.792 kb on - strand, within GFF5256 at 121.792 kb on - strand, within GFF5256 at 121.792 kb on - strand, within GFF5256 at 121.792 kb on - strand, within GFF5256 at 122.018 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.157 kb on + strand, within GFF5256 at 122.158 kb on - strand, within GFF5256 at 122.158 kb on - strand, within GFF5256 at 122.158 kb on - strand, within GFF5256 at 122.158 kb on - strand, within GFF5256 at 122.158 kb on - strand, within GFF5256 at 122.158 kb on - strand, within GFF5256 at 122.158 kb on - strand, within GFF5256 at 122.158 kb on - strand, within GFF5256 at 122.158 kb on - strand, within GFF5256 at 122.220 kb on + strand, within GFF5256 at 122.220 kb on + strand, within GFF5256 at 122.220 kb on + strand, within GFF5256 at 122.221 kb on - strand, within GFF5256 at 122.221 kb on - strand, within GFF5256 at 122.221 kb on - strand, within GFF5256 at 122.331 kb on + strand, within GFF5256 at 122.331 kb on + strand, within GFF5256 at 122.331 kb on + strand, within GFF5256 at 122.331 kb on + strand, within GFF5256 at 122.331 kb on + strand, within GFF5256 at 122.332 kb on - strand, within GFF5256 at 122.332 kb on - strand, within GFF5256 at 122.332 kb on - strand, within GFF5256 at 122.332 kb on - strand, within GFF5256 at 122.332 kb on - strand, within GFF5256 at 122.332 kb on - strand, within GFF5256 at 122.795 kb on + strand, within GFF5257 at 122.795 kb on + strand, within GFF5257 at 122.795 kb on + strand, within GFF5257 at 122.795 kb on + strand, within GFF5257 at 122.795 kb on + strand, within GFF5257 at 122.796 kb on - strand, within GFF5257 at 122.796 kb on - strand, within GFF5257 at 122.796 kb on - strand, within GFF5257 at 122.796 kb on - strand, within GFF5257 at 122.909 kb on + strand, within GFF5257 at 122.910 kb on - strand, within GFF5257 at 123.059 kb on + strand, within GFF5257 at 123.059 kb on + strand, within GFF5257 at 123.059 kb on + strand, within GFF5257 at 123.060 kb on - strand, within GFF5257 at 123.060 kb on - strand, within GFF5257 at 123.060 kb on - strand, within GFF5257 at 123.060 kb on - strand, within GFF5257 at 123.230 kb on + strand, within GFF5257 at 123.230 kb on + strand, within GFF5257 at 123.230 kb on + strand, within GFF5257 at 123.231 kb on - strand, within GFF5257 at 123.231 kb on - strand, within GFF5257 at 123.231 kb on - strand, within GFF5257 at 123.231 kb on - strand, within GFF5257 at 123.231 kb on - strand, within GFF5257 at 123.231 kb on - strand, within GFF5257 at 123.293 kb on + strand, within GFF5257 at 123.293 kb on + strand, within GFF5257 at 123.293 kb on + strand, within GFF5257 at 123.293 kb on + strand, within GFF5257 at 123.293 kb on + strand, within GFF5257 at 123.293 kb on + strand, within GFF5257 at 123.294 kb on - strand, within GFF5257 at 123.294 kb on - strand, within GFF5257 at 123.294 kb on - strand, within GFF5257 at 123.294 kb on - strand, within GFF5257 at 123.294 kb on - strand, within GFF5257 at 123.294 kb on - strand, within GFF5257 at 123.294 kb on - strand, within GFF5257 at 123.356 kb on + strand, within GFF5257 at 123.357 kb on - strand, within GFF5257 at 123.357 kb on - strand, within GFF5257 at 123.578 kb on + strand at 123.592 kb on - strand at 123.627 kb on + strand at 123.627 kb on + strand at 123.627 kb on + strand at 123.627 kb on + strand at 123.628 kb on - strand at 123.628 kb on - strand at 123.629 kb on + strand at 123.629 kb on + strand at 123.629 kb on + strand at 123.629 kb on + strand at 123.630 kb on - strand at 123.630 kb on - strand at 123.630 kb on - strand at 123.726 kb on + strand, within GFF5258 at 123.727 kb on - strand, within GFF5258 at 123.768 kb on + strand, within GFF5258 at 123.768 kb on + strand, within GFF5258 at 123.768 kb on + strand, within GFF5258 at 123.768 kb on + strand, within GFF5258 at 123.768 kb on + strand, within GFF5258 at 123.769 kb on - strand, within GFF5258 at 123.769 kb on - strand, within GFF5258 at 123.769 kb on - strand, within GFF5258 at 123.774 kb on + strand, within GFF5258 at 123.774 kb on + strand, within GFF5258 at 123.774 kb on + strand, within GFF5258 at 123.774 kb on + strand, within GFF5258 at 123.775 kb on - strand, within GFF5258 at 123.775 kb on - strand, within GFF5258 at 123.775 kb on - strand, within GFF5258 at 123.823 kb on - strand, within GFF5258 at 123.834 kb on + strand, within GFF5258 at 123.835 kb on - strand, within GFF5258 at 124.049 kb on + strand, within GFF5259 at 124.050 kb on - strand, within GFF5259 at 124.050 kb on - strand, within GFF5259 at 124.050 kb on - strand, within GFF5259 at 124.058 kb on + strand, within GFF5259 at 124.058 kb on + strand, within GFF5259 at 124.059 kb on - strand, within GFF5259 at 124.059 kb on - strand, within GFF5259 at 124.059 kb on - strand, within GFF5259 at 124.059 kb on - strand, within GFF5259 at 124.088 kb on + strand, within GFF5259 at 124.089 kb on - strand, within GFF5259 at 124.103 kb on + strand, within GFF5259 at 124.103 kb on + strand, within GFF5259 at 124.103 kb on + strand, within GFF5259 at 124.124 kb on + strand, within GFF5259 at 124.125 kb on - strand, within GFF5259 at 124.125 kb on - strand, within GFF5259 at 124.125 kb on - strand, within GFF5259 at 124.125 kb on - strand, within GFF5259 at 124.125 kb on - strand, within GFF5259 at 124.125 kb on - strand, within GFF5259 at 124.220 kb on + strand, within GFF5259 at 124.221 kb on - strand, within GFF5259 at 124.289 kb on + strand, within GFF5259 at 124.289 kb on + strand, within GFF5259 at 124.289 kb on + strand, within GFF5259 at 124.289 kb on + strand, within GFF5259 at 124.289 kb on + strand, within GFF5259 at 124.289 kb on + strand, within GFF5259 at 124.290 kb on - strand, within GFF5259 at 124.290 kb on - strand, within GFF5259 at 124.290 kb on - strand, within GFF5259 at 124.290 kb on - strand, within GFF5259 at 124.290 kb on - strand, within GFF5259 at 124.290 kb on - strand, within GFF5259 at 124.290 kb on - strand, within GFF5259 at 124.290 kb on - strand, within GFF5259 at 124.388 kb on + strand, within GFF5259 at 124.388 kb on + strand, within GFF5259 at 124.388 kb on + strand, within GFF5259 at 124.389 kb on - strand, within GFF5259 at 124.389 kb on - strand, within GFF5259 at 124.394 kb on + strand, within GFF5259 at 124.394 kb on + strand, within GFF5259 at 124.394 kb on + strand, within GFF5259 at 124.395 kb on - strand, within GFF5259 at 124.395 kb on - strand, within GFF5259 at 124.451 kb on + strand, within GFF5259 at 124.451 kb on + strand, within GFF5259 at 124.451 kb on + strand, within GFF5259 at 124.451 kb on + strand, within GFF5259 at 124.451 kb on + strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259 at 124.452 kb on - strand, within GFF5259
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 121,791 + GFF5256 0.29 -0.6 121,791 + GFF5256 0.29 +0.7 121,792 - GFF5256 0.30 +1.4 121,792 - GFF5256 0.30 -1.0 121,792 - GFF5256 0.30 -0.3 121,792 - GFF5256 0.30 +0.7 122,018 + GFF5256 0.51 +0.7 122,157 + GFF5256 0.64 -0.5 122,157 + GFF5256 0.64 -1.5 122,157 + GFF5256 0.64 -0.1 122,157 + GFF5256 0.64 +0.0 122,157 + GFF5256 0.64 -0.1 122,157 + GFF5256 0.64 -0.0 122,157 + GFF5256 0.64 -0.3 122,157 + GFF5256 0.64 -1.0 122,157 + GFF5256 0.64 +0.6 122,157 + GFF5256 0.64 -0.3 122,157 + GFF5256 0.64 +0.3 122,157 + GFF5256 0.64 +0.0 122,157 + GFF5256 0.64 -0.9 122,157 + GFF5256 0.64 +0.2 122,157 + GFF5256 0.64 +0.4 122,157 + GFF5256 0.64 +0.3 122,157 + GFF5256 0.64 +0.2 122,158 - GFF5256 0.64 +0.2 122,158 - GFF5256 0.64 +0.0 122,158 - GFF5256 0.64 +0.1 122,158 - GFF5256 0.64 +0.6 122,158 - GFF5256 0.64 -0.0 122,158 - GFF5256 0.64 +0.3 122,158 - GFF5256 0.64 -0.8 122,158 - GFF5256 0.64 +0.2 122,158 - GFF5256 0.64 -0.2 122,220 + GFF5256 0.69 -0.2 122,220 + GFF5256 0.69 +0.5 122,220 + GFF5256 0.69 +0.6 122,221 - GFF5256 0.70 +0.4 122,221 - GFF5256 0.70 -0.2 122,221 - GFF5256 0.70 -0.5 122,331 + GFF5256 0.80 +0.4 122,331 + GFF5256 0.80 +0.2 122,331 + GFF5256 0.80 -0.1 122,331 + GFF5256 0.80 +0.2 122,331 + GFF5256 0.80 +0.1 122,332 - GFF5256 0.80 -0.6 122,332 - GFF5256 0.80 +0.1 122,332 - GFF5256 0.80 +0.8 122,332 - GFF5256 0.80 -0.3 122,332 - GFF5256 0.80 -0.8 122,332 - GFF5256 0.80 -0.2 122,795 + GFF5257 0.24 +0.1 122,795 + GFF5257 0.24 -0.6 122,795 + GFF5257 0.24 -1.3 122,795 + GFF5257 0.24 +0.4 122,795 + GFF5257 0.24 -0.3 122,796 - GFF5257 0.24 +1.4 122,796 - GFF5257 0.24 +2.4 122,796 - GFF5257 0.24 +0.8 122,796 - GFF5257 0.24 -0.5 122,909 + GFF5257 0.35 -0.0 122,910 - GFF5257 0.35 -0.1 123,059 + GFF5257 0.50 -1.0 123,059 + GFF5257 0.50 -0.9 123,059 + GFF5257 0.50 +0.7 123,060 - GFF5257 0.50 +0.8 123,060 - GFF5257 0.50 -0.0 123,060 - GFF5257 0.50 -1.0 123,060 - GFF5257 0.50 -0.2 123,230 + GFF5257 0.66 +0.7 123,230 + GFF5257 0.66 -0.8 123,230 + GFF5257 0.66 +1.8 123,231 - GFF5257 0.66 -0.2 123,231 - GFF5257 0.66 -0.6 123,231 - GFF5257 0.66 -2.2 123,231 - GFF5257 0.66 -0.3 123,231 - GFF5257 0.66 -0.0 123,231 - GFF5257 0.66 +1.0 123,293 + GFF5257 0.72 -1.0 123,293 + GFF5257 0.72 -0.3 123,293 + GFF5257 0.72 +0.2 123,293 + GFF5257 0.72 +0.1 123,293 + GFF5257 0.72 -1.8 123,293 + GFF5257 0.72 +0.8 123,294 - GFF5257 0.72 +0.8 123,294 - GFF5257 0.72 -0.4 123,294 - GFF5257 0.72 -0.7 123,294 - GFF5257 0.72 -1.0 123,294 - GFF5257 0.72 -2.5 123,294 - GFF5257 0.72 +0.1 123,294 - GFF5257 0.72 +0.2 123,356 + GFF5257 0.78 -0.2 123,357 - GFF5257 0.78 +1.0 123,357 - GFF5257 0.78 -0.5 123,578 + +0.1 123,592 - -1.2 123,627 + -1.0 123,627 + -1.2 123,627 + +1.0 123,627 + +0.2 123,628 - +0.0 123,628 - +0.8 123,629 + +0.4 123,629 + -0.2 123,629 + -0.5 123,629 + +0.2 123,630 - -0.4 123,630 - -0.5 123,630 - -0.3 123,726 + GFF5258 0.28 +0.4 123,727 - GFF5258 0.29 -1.0 123,768 + GFF5258 0.52 -0.6 123,768 + GFF5258 0.52 -0.7 123,768 + GFF5258 0.52 +1.0 123,768 + GFF5258 0.52 -0.8 123,768 + GFF5258 0.52 -0.1 123,769 - GFF5258 0.52 +1.1 123,769 - GFF5258 0.52 -0.1 123,769 - GFF5258 0.52 +0.2 123,774 + GFF5258 0.55 -0.1 123,774 + GFF5258 0.55 -1.3 123,774 + GFF5258 0.55 +0.2 123,774 + GFF5258 0.55 +0.8 123,775 - GFF5258 0.56 -0.7 123,775 - GFF5258 0.56 -0.1 123,775 - GFF5258 0.56 -0.5 123,823 - GFF5258 0.82 +0.8 123,834 + GFF5258 0.88 -0.6 123,835 - GFF5258 0.89 -0.2 124,049 + GFF5259 0.13 -0.1 124,050 - GFF5259 0.13 -0.2 124,050 - GFF5259 0.13 +0.6 124,050 - GFF5259 0.13 -0.3 124,058 + GFF5259 0.14 +0.8 124,058 + GFF5259 0.14 -0.7 124,059 - GFF5259 0.14 +0.0 124,059 - GFF5259 0.14 +0.8 124,059 - GFF5259 0.14 +1.0 124,059 - GFF5259 0.14 -0.8 124,088 + GFF5259 0.16 +0.3 124,089 - GFF5259 0.16 -0.3 124,103 + GFF5259 0.17 -0.2 124,103 + GFF5259 0.17 -0.2 124,103 + GFF5259 0.17 +0.0 124,124 + GFF5259 0.18 -0.3 124,125 - GFF5259 0.18 +0.0 124,125 - GFF5259 0.18 -0.4 124,125 - GFF5259 0.18 +0.2 124,125 - GFF5259 0.18 -0.1 124,125 - GFF5259 0.18 +0.9 124,125 - GFF5259 0.18 +0.1 124,220 + GFF5259 0.24 +0.5 124,221 - GFF5259 0.24 +0.5 124,289 + GFF5259 0.29 +0.4 124,289 + GFF5259 0.29 +0.2 124,289 + GFF5259 0.29 -0.6 124,289 + GFF5259 0.29 -0.3 124,289 + GFF5259 0.29 +0.0 124,289 + GFF5259 0.29 +0.6 124,290 - GFF5259 0.29 +0.2 124,290 - GFF5259 0.29 +0.3 124,290 - GFF5259 0.29 -0.6 124,290 - GFF5259 0.29 -0.6 124,290 - GFF5259 0.29 -0.3 124,290 - GFF5259 0.29 -1.0 124,290 - GFF5259 0.29 -0.3 124,290 - GFF5259 0.29 +0.0 124,388 + GFF5259 0.35 +1.2 124,388 + GFF5259 0.35 -0.7 124,388 + GFF5259 0.35 +0.2 124,389 - GFF5259 0.36 +0.8 124,389 - GFF5259 0.36 +0.3 124,394 + GFF5259 0.36 -0.2 124,394 + GFF5259 0.36 -1.1 124,394 + GFF5259 0.36 -1.2 124,395 - GFF5259 0.36 +0.2 124,395 - GFF5259 0.36 -1.0 124,451 + GFF5259 0.40 +0.8 124,451 + GFF5259 0.40 +1.1 124,451 + GFF5259 0.40 -0.5 124,451 + GFF5259 0.40 -0.8 124,451 + GFF5259 0.40 +0.0 124,452 - GFF5259 0.40 +1.1 124,452 - GFF5259 0.40 -0.2 124,452 - GFF5259 0.40 -0.7 124,452 - GFF5259 0.40 +0.1 124,452 - GFF5259 0.40 +0.1 124,452 - GFF5259 0.40 +0.0 124,452 - GFF5259 0.40 -0.1 124,452 - GFF5259 0.40 -0.1 124,452 - GFF5259 0.40 +0.7 124,452 - GFF5259 0.40 +0.6 124,452 - GFF5259 0.40 -3.4 124,452 - GFF5259 0.40 -0.5 124,452 - GFF5259 0.40 +0.2
Or see this region's nucleotide sequence