Strain Fitness in Variovorax sp. SCN45 around GFF5256

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5255 and GFF5256 are separated by 22 nucleotidesGFF5256 and GFF5257 overlap by 4 nucleotides GFF5255 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 120,542 to 121,453 GFF5255 GFF5256 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 121,476 to 122,546 GFF5256 GFF5257 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 122,543 to 123,580 GFF5257 Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2at 120.758 kb on + strand, within GFF5255at 120.758 kb on + strand, within GFF5255at 120.758 kb on + strand, within GFF5255at 120.759 kb on - strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.810 kb on - strand, within GFF5255at 120.810 kb on - strand, within GFF5255at 120.810 kb on - strand, within GFF5255at 120.933 kb on + strand, within GFF5255at 120.933 kb on + strand, within GFF5255at 120.934 kb on - strand, within GFF5255at 121.077 kb on - strand, within GFF5255at 121.077 kb on - strand, within GFF5255at 121.077 kb on - strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.331 kb on + strand, within GFF5255at 121.331 kb on + strand, within GFF5255at 121.332 kb on - strand, within GFF5255at 121.332 kb on - strand, within GFF5255at 121.332 kb on - strand, within GFF5255at 121.791 kb on + strand, within GFF5256at 121.791 kb on + strand, within GFF5256at 121.792 kb on - strand, within GFF5256at 121.792 kb on - strand, within GFF5256at 121.792 kb on - strand, within GFF5256at 121.792 kb on - strand, within GFF5256at 122.018 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.220 kb on + strand, within GFF5256at 122.220 kb on + strand, within GFF5256at 122.220 kb on + strand, within GFF5256at 122.221 kb on - strand, within GFF5256at 122.221 kb on - strand, within GFF5256at 122.221 kb on - strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.795 kb on + strand, within GFF5257at 122.795 kb on + strand, within GFF5257at 122.795 kb on + strand, within GFF5257at 122.795 kb on + strand, within GFF5257at 122.795 kb on + strand, within GFF5257at 122.796 kb on - strand, within GFF5257at 122.796 kb on - strand, within GFF5257at 122.796 kb on - strand, within GFF5257at 122.796 kb on - strand, within GFF5257at 122.909 kb on + strand, within GFF5257at 122.910 kb on - strand, within GFF5257at 123.059 kb on + strand, within GFF5257at 123.059 kb on + strand, within GFF5257at 123.059 kb on + strand, within GFF5257at 123.060 kb on - strand, within GFF5257at 123.060 kb on - strand, within GFF5257at 123.060 kb on - strand, within GFF5257at 123.060 kb on - strand, within GFF5257at 123.230 kb on + strand, within GFF5257at 123.230 kb on + strand, within GFF5257at 123.230 kb on + strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.356 kb on + strand, within GFF5257at 123.357 kb on - strand, within GFF5257at 123.357 kb on - strand, within GFF5257

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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120,758 + GFF5255 0.24 -0.2
120,758 + GFF5255 0.24 +0.8
120,758 + GFF5255 0.24 -2.2
120,759 - GFF5255 0.24 +0.4
120,809 + GFF5255 0.29 +0.6
120,809 + GFF5255 0.29 +0.8
120,809 + GFF5255 0.29 -0.8
120,809 + GFF5255 0.29 +0.4
120,809 + GFF5255 0.29 -0.6
120,809 + GFF5255 0.29 +0.2
120,810 - GFF5255 0.29 +0.1
120,810 - GFF5255 0.29 -0.1
120,810 - GFF5255 0.29 +1.4
120,933 + GFF5255 0.43 +0.1
120,933 + GFF5255 0.43 +0.8
120,934 - GFF5255 0.43 -0.8
121,077 - GFF5255 0.59 -0.5
121,077 - GFF5255 0.59 +0.0
121,077 - GFF5255 0.59 +0.8
121,124 + GFF5255 0.64 +0.0
121,124 + GFF5255 0.64 -2.4
121,124 + GFF5255 0.64 -0.3
121,124 + GFF5255 0.64 +0.8
121,124 + GFF5255 0.64 -0.2
121,124 + GFF5255 0.64 -0.4
121,125 - GFF5255 0.64 -0.6
121,125 - GFF5255 0.64 -0.6
121,125 - GFF5255 0.64 +0.4
121,125 - GFF5255 0.64 +1.8
121,125 - GFF5255 0.64 -0.9
121,125 - GFF5255 0.64 -0.2
121,125 - GFF5255 0.64 +1.2
121,125 - GFF5255 0.64 -0.8
121,125 - GFF5255 0.64 -0.8
121,331 + GFF5255 0.87 -2.3
121,331 + GFF5255 0.87 +0.2
121,332 - GFF5255 0.87 -1.0
121,332 - GFF5255 0.87 -0.4
121,332 - GFF5255 0.87 -0.4
121,791 + GFF5256 0.29 -0.6
121,791 + GFF5256 0.29 +0.7
121,792 - GFF5256 0.30 +1.4
121,792 - GFF5256 0.30 -1.0
121,792 - GFF5256 0.30 -0.3
121,792 - GFF5256 0.30 +0.7
122,018 + GFF5256 0.51 +0.7
122,157 + GFF5256 0.64 -0.5
122,157 + GFF5256 0.64 -1.5
122,157 + GFF5256 0.64 -0.1
122,157 + GFF5256 0.64 +0.0
122,157 + GFF5256 0.64 -0.1
122,157 + GFF5256 0.64 -0.0
122,157 + GFF5256 0.64 -0.3
122,157 + GFF5256 0.64 -1.0
122,157 + GFF5256 0.64 +0.6
122,157 + GFF5256 0.64 -0.3
122,157 + GFF5256 0.64 +0.3
122,157 + GFF5256 0.64 +0.0
122,157 + GFF5256 0.64 -0.9
122,157 + GFF5256 0.64 +0.2
122,157 + GFF5256 0.64 +0.4
122,157 + GFF5256 0.64 +0.3
122,157 + GFF5256 0.64 +0.2
122,158 - GFF5256 0.64 +0.2
122,158 - GFF5256 0.64 +0.0
122,158 - GFF5256 0.64 +0.1
122,158 - GFF5256 0.64 +0.6
122,158 - GFF5256 0.64 -0.0
122,158 - GFF5256 0.64 +0.3
122,158 - GFF5256 0.64 -0.8
122,158 - GFF5256 0.64 +0.2
122,158 - GFF5256 0.64 -0.2
122,220 + GFF5256 0.69 -0.2
122,220 + GFF5256 0.69 +0.5
122,220 + GFF5256 0.69 +0.6
122,221 - GFF5256 0.70 +0.4
122,221 - GFF5256 0.70 -0.2
122,221 - GFF5256 0.70 -0.5
122,331 + GFF5256 0.80 +0.4
122,331 + GFF5256 0.80 +0.2
122,331 + GFF5256 0.80 -0.1
122,331 + GFF5256 0.80 +0.2
122,331 + GFF5256 0.80 +0.1
122,332 - GFF5256 0.80 -0.6
122,332 - GFF5256 0.80 +0.1
122,332 - GFF5256 0.80 +0.8
122,332 - GFF5256 0.80 -0.3
122,332 - GFF5256 0.80 -0.8
122,332 - GFF5256 0.80 -0.2
122,795 + GFF5257 0.24 +0.1
122,795 + GFF5257 0.24 -0.6
122,795 + GFF5257 0.24 -1.3
122,795 + GFF5257 0.24 +0.4
122,795 + GFF5257 0.24 -0.3
122,796 - GFF5257 0.24 +1.4
122,796 - GFF5257 0.24 +2.4
122,796 - GFF5257 0.24 +0.8
122,796 - GFF5257 0.24 -0.5
122,909 + GFF5257 0.35 -0.0
122,910 - GFF5257 0.35 -0.1
123,059 + GFF5257 0.50 -1.0
123,059 + GFF5257 0.50 -0.9
123,059 + GFF5257 0.50 +0.7
123,060 - GFF5257 0.50 +0.8
123,060 - GFF5257 0.50 -0.0
123,060 - GFF5257 0.50 -1.0
123,060 - GFF5257 0.50 -0.2
123,230 + GFF5257 0.66 +0.7
123,230 + GFF5257 0.66 -0.8
123,230 + GFF5257 0.66 +1.8
123,231 - GFF5257 0.66 -0.2
123,231 - GFF5257 0.66 -0.6
123,231 - GFF5257 0.66 -2.2
123,231 - GFF5257 0.66 -0.3
123,231 - GFF5257 0.66 -0.0
123,231 - GFF5257 0.66 +1.0
123,293 + GFF5257 0.72 -1.0
123,293 + GFF5257 0.72 -0.3
123,293 + GFF5257 0.72 +0.2
123,293 + GFF5257 0.72 +0.1
123,293 + GFF5257 0.72 -1.8
123,293 + GFF5257 0.72 +0.8
123,294 - GFF5257 0.72 +0.8
123,294 - GFF5257 0.72 -0.4
123,294 - GFF5257 0.72 -0.7
123,294 - GFF5257 0.72 -1.0
123,294 - GFF5257 0.72 -2.5
123,294 - GFF5257 0.72 +0.1
123,294 - GFF5257 0.72 +0.2
123,356 + GFF5257 0.78 -0.2
123,357 - GFF5257 0.78 +1.0
123,357 - GFF5257 0.78 -0.5

Or see this region's nucleotide sequence