Strain Fitness in Variovorax sp. SCN45 around GFF525

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF523 and GFF524 are separated by 1 nucleotidesGFF524 and GFF525 are separated by 98 nucleotidesGFF525 and GFF526 are separated by 131 nucleotidesGFF526 and GFF527 overlap by 4 nucleotides GFF523 - Tripartite tricarboxylate transporter TctA family, at 565,227 to 566,750 GFF523 GFF524 - Tripartite tricarboxylate transporter TctB family, at 566,752 to 567,288 GFF524 GFF525 - Tripartite tricarboxylate transporter TctC family, at 567,387 to 568,346 GFF525 GFF526 - Tricarboxylate transport transcriptional regulator TctD, at 568,478 to 569,158 GFF526 GFF527 - Tricarboxylate transport sensor protein TctE, at 569,155 to 570,585 GFF527 Position (kb) 567 568 569Strain fitness (log2 ratio) -2 -1 0 1 2at 566.533 kb on + strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.021 kb on - strand, within GFF524at 567.590 kb on - strand, within GFF525at 567.712 kb on + strand, within GFF525at 567.712 kb on + strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.983 kb on - strand, within GFF525at 567.983 kb on - strand, within GFF525at 567.983 kb on - strand, within GFF525at 568.159 kb on + strand, within GFF525at 568.159 kb on + strand, within GFF525at 568.160 kb on - strand, within GFF525at 568.160 kb on - strand, within GFF525at 568.400 kb on + strandat 568.400 kb on + strandat 568.400 kb on + strandat 568.400 kb on + strandat 568.400 kb on + strandat 568.401 kb on - strandat 568.401 kb on - strandat 568.401 kb on - strandat 568.401 kb on - strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.478 kb on - strandat 568.478 kb on - strandat 568.478 kb on - strandat 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.049 kb on - strand, within GFF526at 569.049 kb on - strand, within GFF526at 569.135 kb on + strandat 569.135 kb on + strandat 569.136 kb on - strandat 569.136 kb on - strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.246 kb on - strandat 569.278 kb on + strandat 569.278 kb on + strandat 569.338 kb on + strand, within GFF527at 569.338 kb on + strand, within GFF527at 569.338 kb on + strand, within GFF527at 569.339 kb on - strand, within GFF527

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
566,533 + GFF523 0.86 +2.4
566,533 + GFF523 0.86 +0.9
566,533 + GFF523 0.86 +0.8
566,533 + GFF523 0.86 -0.1
566,534 - GFF523 0.86 -1.4
566,534 - GFF523 0.86 -0.9
566,534 - GFF523 0.86 -0.7
566,534 - GFF523 0.86 -0.6
566,534 - GFF523 0.86 -2.4
566,534 - GFF523 0.86 +0.4
566,534 - GFF523 0.86 +2.0
566,534 - GFF523 0.86 -1.2
566,545 + GFF523 0.86 +0.8
566,545 + GFF523 0.86 +0.6
566,545 + GFF523 0.86 -0.7
566,545 + GFF523 0.86 +0.6
566,545 + GFF523 0.86 +0.2
566,545 + GFF523 0.86 -0.0
566,546 - GFF523 0.87 +0.7
566,546 - GFF523 0.87 -1.4
566,546 - GFF523 0.87 +0.2
566,546 - GFF523 0.87 -0.9
566,548 + GFF523 0.87 +2.4
566,548 + GFF523 0.87 -0.4
566,548 + GFF523 0.87 -0.5
566,548 + GFF523 0.87 -0.1
566,548 + GFF523 0.87 -0.4
566,548 + GFF523 0.87 -0.0
566,548 + GFF523 0.87 +0.3
566,548 + GFF523 0.87 +0.3
566,549 - GFF523 0.87 +0.3
566,549 - GFF523 0.87 -2.1
566,549 - GFF523 0.87 -0.8
566,549 - GFF523 0.87 -1.1
566,549 - GFF523 0.87 -0.4
566,927 + GFF524 0.33 +2.0
566,927 + GFF524 0.33 -0.8
566,927 + GFF524 0.33 -0.8
566,927 + GFF524 0.33 +0.2
566,927 + GFF524 0.33 +0.1
566,927 + GFF524 0.33 +0.0
566,927 + GFF524 0.33 +0.8
566,928 - GFF524 0.33 -0.4
566,928 - GFF524 0.33 +0.3
566,928 - GFF524 0.33 +0.1
566,928 - GFF524 0.33 +0.5
566,928 - GFF524 0.33 +0.1
566,928 - GFF524 0.33 -0.2
567,020 + GFF524 0.50 +0.0
567,020 + GFF524 0.50 -0.9
567,020 + GFF524 0.50 -0.2
567,020 + GFF524 0.50 +0.4
567,021 - GFF524 0.50 -0.4
567,590 - GFF525 0.21 +0.9
567,712 + GFF525 0.34 +0.5
567,712 + GFF525 0.34 -0.6
567,713 - GFF525 0.34 -0.1
567,713 - GFF525 0.34 -0.8
567,713 - GFF525 0.34 -2.2
567,713 - GFF525 0.34 -0.7
567,713 - GFF525 0.34 -0.2
567,713 - GFF525 0.34 -0.3
567,713 - GFF525 0.34 +0.6
567,805 + GFF525 0.44 +0.5
567,805 + GFF525 0.44 -0.3
567,805 + GFF525 0.44 +0.8
567,805 + GFF525 0.44 +0.8
567,805 + GFF525 0.44 -0.1
567,805 + GFF525 0.44 -0.9
567,805 + GFF525 0.44 +0.9
567,805 + GFF525 0.44 -0.9
567,805 + GFF525 0.44 -0.4
567,805 + GFF525 0.44 +0.8
567,805 + GFF525 0.44 -0.5
567,805 + GFF525 0.44 -0.9
567,805 + GFF525 0.44 -1.6
567,805 + GFF525 0.44 +0.3
567,806 - GFF525 0.44 -0.1
567,806 - GFF525 0.44 +0.6
567,806 - GFF525 0.44 +0.4
567,806 - GFF525 0.44 +1.0
567,806 - GFF525 0.44 +0.3
567,806 - GFF525 0.44 -0.2
567,806 - GFF525 0.44 -0.3
567,806 - GFF525 0.44 +1.0
567,806 - GFF525 0.44 +0.2
567,806 - GFF525 0.44 -0.3
567,806 - GFF525 0.44 -0.3
567,806 - GFF525 0.44 +0.5
567,806 - GFF525 0.44 -0.6
567,982 + GFF525 0.62 -0.1
567,982 + GFF525 0.62 +0.1
567,982 + GFF525 0.62 +0.2
567,982 + GFF525 0.62 +0.2
567,982 + GFF525 0.62 -0.7
567,982 + GFF525 0.62 -0.7
567,982 + GFF525 0.62 -0.1
567,983 - GFF525 0.62 +0.4
567,983 - GFF525 0.62 -1.9
567,983 - GFF525 0.62 +0.7
568,159 + GFF525 0.80 +0.1
568,159 + GFF525 0.80 +0.7
568,160 - GFF525 0.81 -0.6
568,160 - GFF525 0.81 +1.9
568,400 + -0.0
568,400 + -0.5
568,400 + -0.7
568,400 + -1.0
568,400 + -0.9
568,401 - +0.1
568,401 - +0.1
568,401 - -0.6
568,401 - -0.0
568,477 + -0.2
568,477 + -0.1
568,477 + -0.0
568,477 + -0.2
568,477 + -0.4
568,478 - +0.4
568,478 - -0.5
568,478 - -0.2
568,770 - GFF526 0.43 +0.8
568,770 - GFF526 0.43 +0.8
568,770 - GFF526 0.43 +0.6
568,770 - GFF526 0.43 +0.2
568,770 - GFF526 0.43 -0.8
568,770 - GFF526 0.43 -1.2
568,913 + GFF526 0.64 -0.3
568,913 + GFF526 0.64 -1.4
568,913 + GFF526 0.64 -0.9
568,913 + GFF526 0.64 -2.1
568,913 + GFF526 0.64 -0.5
568,913 + GFF526 0.64 -0.2
568,913 + GFF526 0.64 +0.4
568,913 + GFF526 0.64 -0.7
568,913 + GFF526 0.64 +0.3
568,914 - GFF526 0.64 +0.7
568,914 - GFF526 0.64 -0.3
568,914 - GFF526 0.64 -0.2
568,914 - GFF526 0.64 -0.0
568,914 - GFF526 0.64 -0.4
568,914 - GFF526 0.64 +0.0
568,914 - GFF526 0.64 -0.6
569,048 + GFF526 0.84 +0.7
569,048 + GFF526 0.84 -0.6
569,048 + GFF526 0.84 -0.4
569,048 + GFF526 0.84 -1.0
569,049 - GFF526 0.84 +0.2
569,049 - GFF526 0.84 -0.7
569,135 + -0.2
569,135 + -0.0
569,136 - -1.3
569,136 - +0.2
569,163 + +1.3
569,163 + -0.6
569,163 + +0.1
569,163 + -0.7
569,163 + -0.1
569,163 + +0.6
569,163 + +0.4
569,163 + +0.0
569,163 + +1.1
569,163 + -0.2
569,163 + -0.9
569,163 + +0.4
569,163 + -0.5
569,164 - -0.3
569,164 - -0.9
569,164 - -0.8
569,164 - +0.5
569,164 - +0.0
569,164 - -1.1
569,164 - -0.2
569,164 - -1.2
569,164 - +1.1
569,164 - -0.2
569,164 - +0.1
569,164 - -0.0
569,164 - +0.6
569,164 - -0.5
569,164 - -0.4
569,246 - -0.8
569,278 + -0.0
569,278 + -1.1
569,338 + GFF527 0.13 +0.2
569,338 + GFF527 0.13 -1.4
569,338 + GFF527 0.13 +2.1
569,339 - GFF527 0.13 +0.3

Or see this region's nucleotide sequence