Strain Fitness in Variovorax sp. SCN45 around GFF5216

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
78,402	+		GFF5215	0.54	-0.9
78,486	+		GFF5215	0.58	-0.4
78,812	-		GFF5215	0.77	+0.1
78,852	+		GFF5215	0.79	+0.5
78,852	+		GFF5215	0.79	-0.1
78,853	-		GFF5215	0.79	-0.4
78,886	-		GFF5215	0.81	+0.8
78,886	-		GFF5215	0.81	-1.0
78,904	+		GFF5215	0.82	+1.8
78,936	+		GFF5215	0.83	+0.9
78,937	-		GFF5215	0.83	+0.6
79,038	+		GFF5215	0.89	+0.1
79,038	+		GFF5215	0.89	+0.1
79,077	+				+0.5
79,077	+				-0.2
79,077	+				+0.2
79,078	-				-0.2
79,083	+				+0.8
79,083	+				+0.2
79,083	+				-0.3
79,083	+				-0.8
79,084	-				-0.5
79,084	-				-0.3
79,084	-				+1.2
79,084	-				-0.3
79,153	-				-0.7
79,567	+		GFF5216	0.42	+0.0
79,568	-		GFF5216	0.42	+0.1
79,568	-		GFF5216	0.42	-2.5
79,649	-		GFF5216	0.57	+0.4
79,649	-		GFF5216	0.57	-0.1
79,649	-		GFF5216	0.57	-0.4
79,649	-		GFF5216	0.57	-0.6
79,649	-		GFF5216	0.57	-0.1
79,649	-		GFF5216	0.57	-0.5
79,649	-		GFF5216	0.57	-1.5
79,679	+		GFF5216	0.62	-0.4
79,679	+		GFF5216	0.62	-0.9
80,026	-				-0.2
80,026	-				-0.9
80,026	-				-0.2
80,073	-				+0.8
80,239	-				-1.2
80,272	-		GFF5217	0.13	+0.5
80,314	-		GFF5217	0.17	+0.1
80,619	+		GFF5217	0.46	-0.0
80,619	+		GFF5217	0.46	-0.5
80,668	-		GFF5217	0.51	+1.2
80,668	-		GFF5217	0.51	+0.2
80,754	+		GFF5217	0.59	+0.4
80,754	+		GFF5217	0.59	+0.3
80,754	+		GFF5217	0.59	-0.3
80,754	+		GFF5217	0.59	+0.6
80,754	+		GFF5217	0.59	-0.4
80,754	+		GFF5217	0.59	-0.9
80,755	-		GFF5217	0.59	+0.0
80,755	-		GFF5217	0.59	-1.5