Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5208 and GFF5209 overlap by 4 nucleotides GFF5209 and GFF5210 are separated by 80 nucleotides GFF5210 and GFF5211 overlap by 4 nucleotides
GFF5208 - Efflux ABC transporter, permease/ATP-binding protein Reut_A2584, at 69,740 to 71,761
GFF5208
GFF5209 - DUF1854 domain-containing protein, at 71,758 to 72,240
GFF5209
GFF5210 - hypothetical protein, at 72,321 to 73,031
GFF5210
GFF5211 - Alkaline phosphatase (EC 3.1.3.1), at 73,028 to 74,566
GFF5211
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1 at 71.325 kb on - strand, within GFF5208 at 71.630 kb on + strand at 71.630 kb on + strand at 71.643 kb on - strand at 71.643 kb on - strand at 71.643 kb on - strand at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.850 kb on - strand, within GFF5209 at 71.850 kb on - strand, within GFF5209 at 71.850 kb on - strand, within GFF5209 at 72.341 kb on - strand at 72.356 kb on - strand at 72.356 kb on - strand at 72.463 kb on + strand, within GFF5210 at 72.520 kb on + strand, within GFF5210 at 73.344 kb on + strand, within GFF5211 at 73.344 kb on + strand, within GFF5211 at 73.344 kb on + strand, within GFF5211 at 73.386 kb on + strand, within GFF5211 at 73.386 kb on + strand, within GFF5211 at 73.387 kb on - strand, within GFF5211 at 73.387 kb on - strand, within GFF5211 at 73.512 kb on + strand, within GFF5211 at 73.722 kb on + strand, within GFF5211 at 73.809 kb on + strand, within GFF5211 at 73.810 kb on - strand, within GFF5211 at 73.894 kb on - strand, within GFF5211 at 73.951 kb on - strand, within GFF5211 at 73.992 kb on + strand, within GFF5211 at 74.020 kb on - strand, within GFF5211
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 71,325 - GFF5208 0.78 +0.2 71,630 + -0.4 71,630 + -2.3 71,643 - -1.2 71,643 - +1.0 71,643 - +0.0 71,849 + GFF5209 0.19 -0.0 71,849 + GFF5209 0.19 +0.0 71,849 + GFF5209 0.19 +0.1 71,849 + GFF5209 0.19 -0.1 71,849 + GFF5209 0.19 +0.1 71,849 + GFF5209 0.19 -0.3 71,850 - GFF5209 0.19 +0.2 71,850 - GFF5209 0.19 +0.7 71,850 - GFF5209 0.19 -0.6 72,341 - -0.2 72,356 - -0.1 72,356 - +1.0 72,463 + GFF5210 0.20 -0.5 72,520 + GFF5210 0.28 -1.0 73,344 + GFF5211 0.21 +1.2 73,344 + GFF5211 0.21 +0.8 73,344 + GFF5211 0.21 -1.3 73,386 + GFF5211 0.23 -1.4 73,386 + GFF5211 0.23 +1.2 73,387 - GFF5211 0.23 -0.4 73,387 - GFF5211 0.23 -1.5 73,512 + GFF5211 0.31 +0.2 73,722 + GFF5211 0.45 -0.9 73,809 + GFF5211 0.51 -0.8 73,810 - GFF5211 0.51 +0.4 73,894 - GFF5211 0.56 -0.5 73,951 - GFF5211 0.60 -1.0 73,992 + GFF5211 0.63 +0.6 74,020 - GFF5211 0.64 -1.1
Or see this region's nucleotide sequence