Strain Fitness in Variovorax sp. SCN45 around GFF5149

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
1,348	+		GFF5148	0.12	-2.0
1,348	+		GFF5148	0.12	-0.4
1,586	-		GFF5148	0.35	-0.7
1,586	-		GFF5148	0.35	-1.8
1,588	+		GFF5148	0.35	+0.6
1,588	+		GFF5148	0.35	+0.5
1,589	-		GFF5148	0.35	+0.6
1,589	-		GFF5148	0.35	+0.2
1,589	-		GFF5148	0.35	-0.2
1,589	-		GFF5148	0.35	-0.6
1,888	+		GFF5148	0.65	-1.2
1,888	+		GFF5148	0.65	-0.3
1,888	+		GFF5148	0.65	-0.9
1,889	-		GFF5148	0.65	-0.1
1,889	-		GFF5148	0.65	-1.2
1,928	-		GFF5148	0.69	+0.9
1,928	-		GFF5148	0.69	+1.8
1,966	+		GFF5148	0.73	+0.1
1,966	+		GFF5148	0.73	-0.2
1,966	+		GFF5148	0.73	-1.1
1,966	+		GFF5148	0.73	+1.2
1,966	+		GFF5148	0.73	-1.3
1,967	-		GFF5148	0.73	+0.2
1,967	-		GFF5148	0.73	+0.2
2,041	+		GFF5148	0.80	+0.3
2,041	+		GFF5148	0.80	-0.8
2,041	+		GFF5148	0.80	-0.3
2,041	+		GFF5148	0.80	-0.4
2,041	+		GFF5148	0.80	-0.5
2,041	+		GFF5148	0.80	-1.1
2,041	+		GFF5148	0.80	+0.0
2,041	+		GFF5148	0.80	+0.4
2,041	+		GFF5148	0.80	-0.8
2,041	+		GFF5148	0.80	+0.8
2,041	+		GFF5148	0.80	-0.4
2,042	-		GFF5148	0.80	-0.6
2,042	-		GFF5148	0.80	-0.6
2,042	-		GFF5148	0.80	-0.3
2,042	-		GFF5148	0.80	-0.3
2,042	-		GFF5148	0.80	-0.7
2,042	-		GFF5148	0.80	-0.6
2,042	-		GFF5148	0.80	+0.4
2,042	-		GFF5148	0.80	-1.1
2,042	-		GFF5148	0.80	-0.4
2,137	+		GFF5148	0.90	-0.4
2,137	+		GFF5148	0.90	-0.2
2,137	+		GFF5148	0.90	+0.1
2,137	+		GFF5148	0.90	-0.2
2,137	+		GFF5148	0.90	+0.8
2,137	+		GFF5148	0.90	+0.8
2,137	+		GFF5148	0.90	-0.2
2,138	-		GFF5148	0.90	-0.0
2,138	-		GFF5148	0.90	-2.1
2,138	-		GFF5148	0.90	+1.8
2,203	+				+0.2
2,203	+				-0.2
2,203	+				+0.5
2,204	-				+0.1
2,204	-				-1.0
2,204	-				+0.2
2,204	-				-1.1
2,204	-				+0.1
2,204	-				+1.0
2,204	-				-0.5
2,425	-		GFF5149	0.20	-0.2
2,745	+		GFF5149	0.55	-0.1
2,745	+		GFF5149	0.55	-0.7
2,745	+		GFF5149	0.55	-0.7
2,745	+		GFF5149	0.55	-0.3
2,746	-		GFF5149	0.55	+0.5
2,746	-		GFF5149	0.55	-0.8
2,746	-		GFF5149	0.55	-0.8
2,746	-		GFF5149	0.55	-0.2
2,746	-		GFF5149	0.55	-1.2
2,746	-		GFF5149	0.55	-0.8
2,746	-		GFF5149	0.55	-0.8
3,280	+				+0.0
3,280	+				-0.5
3,280	+				-0.6
3,280	+				+1.8
3,280	+				+0.1
3,280	+				-1.1
3,280	+				-0.2
3,280	+				-1.4
3,280	+				-0.3
3,280	+				-0.4
3,280	+				+0.7
3,280	+				+0.1
3,280	+				-0.2
3,280	+				-0.2
3,280	+				-0.1
3,280	+				-0.8
3,281	-				+0.0
3,281	-				-1.6
3,281	-				+0.0
3,281	-				+0.1
3,281	-				+1.2
3,281	-				+0.5
3,281	-				-0.2
3,281	-				-0.4
3,281	-				-0.3
3,281	-				+0.7
3,281	-				-0.2
3,281	-				-2.1
3,281	-				-1.0
3,281	-				-0.1
3,281	-				+0.1
3,281	-				-0.7
3,281	-				-0.5
3,320	-				+0.6
3,583	+		GFF5150	0.34	-1.6
3,584	-		GFF5150	0.34	+0.8
3,584	-		GFF5150	0.34	+0.2
3,584	-		GFF5150	0.34	-1.0
3,792	+		GFF5150	0.58	-0.6
3,792	+		GFF5150	0.58	-0.8
3,792	+		GFF5150	0.58	+0.0
3,792	+		GFF5150	0.58	-0.3
3,792	+		GFF5150	0.58	+0.4
3,792	+		GFF5150	0.58	-1.0
3,792	+		GFF5150	0.58	-0.2
3,792	+		GFF5150	0.58	-0.2
3,793	-		GFF5150	0.58	+0.2
3,793	-		GFF5150	0.58	-0.4
3,793	-		GFF5150	0.58	-1.0
3,793	-		GFF5150	0.58	+0.7
3,793	-		GFF5150	0.58	+0.1
3,793	-		GFF5150	0.58	-1.4
3,793	-		GFF5150	0.58	+0.5
3,796	+		GFF5150	0.59	-0.0
3,796	+		GFF5150	0.59	-0.2
3,796	+		GFF5150	0.59	+0.2
3,796	+		GFF5150	0.59	+0.1
3,796	+		GFF5150	0.59	+0.4
3,796	+		GFF5150	0.59	+0.2
3,796	+		GFF5150	0.59	-0.8
3,796	+		GFF5150	0.59	-0.8
3,796	+		GFF5150	0.59	-1.3
3,796	+		GFF5150	0.59	-0.2
3,796	+		GFF5150	0.59	-0.5
3,797	-		GFF5150	0.59	-2.3
3,797	-		GFF5150	0.59	-1.9
3,797	-		GFF5150	0.59	+0.0
3,797	-		GFF5150	0.59	-1.9
3,797	-		GFF5150	0.59	-0.0
3,797	-		GFF5150	0.59	+1.8
3,797	-		GFF5150	0.59	-0.7
3,797	-		GFF5150	0.59	-0.4
3,797	-		GFF5150	0.59	-1.8
3,797	-		GFF5150	0.59	-1.0
3,797	-		GFF5150	0.59	+0.7
3,797	-		GFF5150	0.59	-0.2
3,847	+		GFF5150	0.64	-0.5
3,847	+		GFF5150	0.64	-1.1
3,847	+		GFF5150	0.64	-0.8
3,847	+		GFF5150	0.64	-0.5
3,847	+		GFF5150	0.64	-1.8
3,848	-		GFF5150	0.65	+0.1
3,848	-		GFF5150	0.65	+0.0
3,848	-		GFF5150	0.65	-0.1
3,848	-		GFF5150	0.65	-0.5
3,848	-		GFF5150	0.65	-0.7
3,868	+		GFF5150	0.67	-1.4
3,868	+		GFF5150	0.67	+0.1
3,869	-		GFF5150	0.67	-0.3
3,869	-		GFF5150	0.67	-1.6
4,009	+		GFF5150	0.83	-0.4
4,009	+		GFF5150	0.83	-0.3
4,009	+		GFF5150	0.83	-0.7
4,009	+		GFF5150	0.83	+0.2
4,009	+		GFF5150	0.83	-0.2
4,009	+		GFF5150	0.83	-1.9
4,009	+		GFF5150	0.83	+1.8
4,009	+		GFF5150	0.83	-0.3
4,009	+		GFF5150	0.83	+0.8
4,009	+		GFF5150	0.83	-0.2
4,009	+		GFF5150	0.83	-2.5
4,009	+		GFF5150	0.83	+0.4
4,010	-		GFF5150	0.83	-1.1
4,010	-		GFF5150	0.83	+0.2
4,010	-		GFF5150	0.83	+0.6
4,010	-		GFF5150	0.83	-0.2
4,010	-		GFF5150	0.83	+0.2
4,010	-		GFF5150	0.83	-0.1
4,010	-		GFF5150	0.83	-1.5
4,010	-		GFF5150	0.83	-0.4
4,010	-		GFF5150	0.83	-0.4
4,010	-		GFF5150	0.83	-0.9
4,036	+		GFF5150	0.86	-0.3
4,036	+		GFF5150	0.86	-0.5
4,036	+		GFF5150	0.86	-0.8
4,036	+		GFF5150	0.86	-1.0
4,036	+		GFF5150	0.86	+0.3
4,036	+		GFF5150	0.86	+0.1
4,036	+		GFF5150	0.86	-0.2
4,036	+		GFF5150	0.86	-0.3
4,036	+		GFF5150	0.86	-0.3
4,037	-		GFF5150	0.86	-0.2
4,037	-		GFF5150	0.86	+0.5
4,037	-		GFF5150	0.86	-0.1
4,037	-		GFF5150	0.86	-0.4
4,037	-		GFF5150	0.86	-0.8
4,037	-		GFF5150	0.86	-0.2
4,037	-		GFF5150	0.86	-0.6
4,037	-		GFF5150	0.86	-0.2
4,037	-		GFF5150	0.86	-0.0
4,037	-		GFF5150	0.86	-0.5
4,037	-		GFF5150	0.86	-1.3
4,125	+				-0.1
4,125	+				-0.2
4,125	+				+0.4
4,125	+				+2.6
4,125	+				+0.2
4,125	+				+0.5
4,130	+				-0.3