Strain Fitness in Variovorax sp. SCN45 around GFF5133

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5132 and GFF5133 are separated by 168 nucleotidesGFF5133 and GFF5134 are separated by 57 nucleotides GFF5132 - no description, at 231,496 to 232,404 GFF5132 GFF5133 - hypothetical protein, at 232,573 to 233,625 GFF5133 GFF5134 - Chromosome partition protein smc, at 233,683 to 237,153 GFF5134 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.713 kb on - strand, within GFF5132at 231.713 kb on - strand, within GFF5132at 231.901 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.945 kb on - strand, within GFF5132at 231.945 kb on - strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.995 kb on - strand, within GFF5132at 232.118 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.130 kb on - strand, within GFF5132at 232.130 kb on - strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.234 kb on - strand, within GFF5132at 232.234 kb on - strand, within GFF5132at 232.239 kb on - strand, within GFF5132at 232.373 kb on + strandat 232.373 kb on + strandat 232.373 kb on + strandat 232.374 kb on - strandat 232.374 kb on - strandat 232.417 kb on + strandat 232.417 kb on + strandat 232.417 kb on + strandat 232.418 kb on - strandat 232.420 kb on - strandat 232.420 kb on - strandat 232.420 kb on - strandat 232.532 kb on + strandat 232.533 kb on - strandat 232.533 kb on - strandat 232.533 kb on - strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.536 kb on - strandat 232.536 kb on - strandat 232.560 kb on + strandat 232.618 kb on + strandat 232.618 kb on + strandat 232.618 kb on + strandat 232.619 kb on - strandat 232.649 kb on + strandat 232.649 kb on + strandat 232.649 kb on + strandat 232.650 kb on - strandat 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.836 kb on - strand, within GFF5133at 232.836 kb on - strand, within GFF5133at 232.836 kb on - strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.880 kb on + strand, within GFF5133at 232.916 kb on + strand, within GFF5133at 232.916 kb on + strand, within GFF5133at 232.991 kb on + strand, within GFF5133at 232.991 kb on + strand, within GFF5133at 232.992 kb on - strand, within GFF5133at 232.992 kb on - strand, within GFF5133at 233.124 kb on + strand, within GFF5133at 233.125 kb on - strand, within GFF5133at 233.125 kb on - strand, within GFF5133at 233.125 kb on - strand, within GFF5133at 233.156 kb on + strand, within GFF5133at 233.157 kb on - strand, within GFF5133at 233.285 kb on + strand, within GFF5133at 233.285 kb on + strand, within GFF5133at 233.286 kb on - strand, within GFF5133at 233.286 kb on - strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.325 kb on - strand, within GFF5133at 233.325 kb on - strand, within GFF5133at 233.685 kb on - strandat 233.772 kb on + strandat 233.772 kb on + strandat 233.996 kb on + strandat 233.997 kb on - strandat 233.997 kb on - strandat 233.997 kb on - strandat 234.170 kb on + strand, within GFF5134at 234.170 kb on + strand, within GFF5134at 234.171 kb on - strand, within GFF5134at 234.290 kb on - strand, within GFF5134at 234.611 kb on + strand, within GFF5134at 234.612 kb on - strand, within GFF5134

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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231,712 + GFF5132 0.24 +1.5
231,712 + GFF5132 0.24 -1.3
231,712 + GFF5132 0.24 +0.4
231,712 + GFF5132 0.24 +0.1
231,713 - GFF5132 0.24 -2.0
231,713 - GFF5132 0.24 -0.1
231,901 + GFF5132 0.45 +0.6
231,944 + GFF5132 0.49 +0.6
231,944 + GFF5132 0.49 +0.6
231,944 + GFF5132 0.49 +0.5
231,945 - GFF5132 0.49 -0.6
231,945 - GFF5132 0.49 -0.2
231,994 + GFF5132 0.55 +2.0
231,994 + GFF5132 0.55 -0.0
231,994 + GFF5132 0.55 -0.0
231,994 + GFF5132 0.55 -1.7
231,994 + GFF5132 0.55 -0.8
231,994 + GFF5132 0.55 -1.1
231,995 - GFF5132 0.55 -0.2
232,118 + GFF5132 0.68 -0.7
232,129 + GFF5132 0.70 -1.0
232,129 + GFF5132 0.70 -0.4
232,129 + GFF5132 0.70 -0.4
232,129 + GFF5132 0.70 -1.6
232,130 - GFF5132 0.70 -0.4
232,130 - GFF5132 0.70 -0.8
232,233 + GFF5132 0.81 +2.6
232,233 + GFF5132 0.81 -0.8
232,233 + GFF5132 0.81 -0.0
232,233 + GFF5132 0.81 -0.6
232,233 + GFF5132 0.81 +1.0
232,234 - GFF5132 0.81 +0.7
232,234 - GFF5132 0.81 +1.0
232,239 - GFF5132 0.82 -0.7
232,373 + +1.4
232,373 + +0.3
232,373 + +0.9
232,374 - -0.4
232,374 - -0.2
232,417 + -0.3
232,417 + -0.6
232,417 + -0.1
232,418 - -0.5
232,420 - -0.4
232,420 - -0.4
232,420 - -0.2
232,532 + -0.6
232,533 - +0.2
232,533 - -0.6
232,533 - +0.0
232,535 + +0.5
232,535 + -1.3
232,535 + -0.4
232,535 + +0.1
232,535 + +1.4
232,535 + -0.4
232,536 - +0.3
232,536 - -0.9
232,560 + +0.2
232,618 + +1.5
232,618 + -0.2
232,618 + +0.6
232,619 - -1.8
232,649 + +0.1
232,649 + -0.7
232,649 + -0.2
232,650 - +0.1
232,724 + GFF5133 0.14 -0.1
232,724 + GFF5133 0.14 -0.2
232,724 + GFF5133 0.14 -0.6
232,724 + GFF5133 0.14 +0.1
232,724 + GFF5133 0.14 +0.1
232,724 + GFF5133 0.14 +0.1
232,724 + GFF5133 0.14 +0.4
232,724 + GFF5133 0.14 +1.0
232,724 + GFF5133 0.14 -0.8
232,724 + GFF5133 0.14 +0.7
232,725 - GFF5133 0.14 -0.2
232,725 - GFF5133 0.14 +0.5
232,725 - GFF5133 0.14 +0.7
232,725 - GFF5133 0.14 -1.7
232,725 - GFF5133 0.14 +0.7
232,725 - GFF5133 0.14 -0.0
232,836 - GFF5133 0.25 -0.4
232,836 - GFF5133 0.25 -0.0
232,836 - GFF5133 0.25 +0.2
232,839 + GFF5133 0.25 -0.8
232,839 + GFF5133 0.25 +0.8
232,839 + GFF5133 0.25 +0.2
232,839 + GFF5133 0.25 +0.5
232,839 + GFF5133 0.25 -0.6
232,839 + GFF5133 0.25 -0.0
232,839 + GFF5133 0.25 +1.6
232,839 + GFF5133 0.25 -0.6
232,840 - GFF5133 0.25 -0.1
232,840 - GFF5133 0.25 -0.3
232,840 - GFF5133 0.25 +0.5
232,840 - GFF5133 0.25 +2.6
232,840 - GFF5133 0.25 +0.5
232,840 - GFF5133 0.25 -0.1
232,880 + GFF5133 0.29 +0.4
232,916 + GFF5133 0.33 -0.4
232,916 + GFF5133 0.33 +0.0
232,991 + GFF5133 0.40 +0.6
232,991 + GFF5133 0.40 -0.8
232,992 - GFF5133 0.40 +0.4
232,992 - GFF5133 0.40 -0.9
233,124 + GFF5133 0.52 -0.6
233,125 - GFF5133 0.52 +0.3
233,125 - GFF5133 0.52 -0.0
233,125 - GFF5133 0.52 -0.0
233,156 + GFF5133 0.55 -1.0
233,157 - GFF5133 0.55 +0.3
233,285 + GFF5133 0.68 -1.4
233,285 + GFF5133 0.68 -0.4
233,286 - GFF5133 0.68 -1.4
233,286 - GFF5133 0.68 -0.7
233,320 + GFF5133 0.71 -0.1
233,320 + GFF5133 0.71 +0.2
233,320 + GFF5133 0.71 +0.2
233,320 + GFF5133 0.71 -0.6
233,320 + GFF5133 0.71 -0.6
233,320 + GFF5133 0.71 +0.2
233,320 + GFF5133 0.71 +0.0
233,320 + GFF5133 0.71 -0.9
233,320 + GFF5133 0.71 +0.2
233,320 + GFF5133 0.71 +0.5
233,320 + GFF5133 0.71 +0.4
233,320 + GFF5133 0.71 +0.1
233,321 - GFF5133 0.71 +0.8
233,321 - GFF5133 0.71 -0.4
233,321 - GFF5133 0.71 -1.4
233,321 - GFF5133 0.71 -0.5
233,321 - GFF5133 0.71 -0.3
233,321 - GFF5133 0.71 +0.5
233,321 - GFF5133 0.71 -0.0
233,321 - GFF5133 0.71 -0.7
233,324 + GFF5133 0.71 +0.0
233,324 + GFF5133 0.71 +0.2
233,324 + GFF5133 0.71 -0.2
233,324 + GFF5133 0.71 -0.1
233,325 - GFF5133 0.71 +0.8
233,325 - GFF5133 0.71 +0.7
233,685 - -0.1
233,772 + -0.0
233,772 + -0.7
233,996 + +1.1
233,997 - -1.5
233,997 - -0.4
233,997 - -0.4
234,170 + GFF5134 0.14 -0.5
234,170 + GFF5134 0.14 -0.6
234,171 - GFF5134 0.14 -0.4
234,290 - GFF5134 0.17 -0.3
234,611 + GFF5134 0.27 -0.1
234,612 - GFF5134 0.27 -0.4

Or see this region's nucleotide sequence