Strain Fitness in Variovorax sp. SCN45 around GFF5103

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5102 and GFF5103 are separated by 19 nucleotidesGFF5103 and GFF5104 are separated by 13 nucleotides GFF5102 - BUG/TctC family periplasmic protein, at 203,645 to 204,640 GFF5102 GFF5103 - Class II aldolase/adducin, N-terminal, at 204,660 to 205,451 GFF5103 GFF5104 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 205,465 to 206,454 GFF5104 Position (kb) 204 205 206Strain fitness (log2 ratio) -2 -1 0 1at 203.891 kb on + strand, within GFF5102at 203.891 kb on + strand, within GFF5102at 203.958 kb on - strand, within GFF5102at 203.958 kb on - strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.984 kb on + strand, within GFF5102at 203.984 kb on + strand, within GFF5102at 203.984 kb on + strand, within GFF5102at 203.985 kb on - strand, within GFF5102at 203.985 kb on - strand, within GFF5102at 203.985 kb on - strand, within GFF5102at 204.128 kb on + strand, within GFF5102at 204.128 kb on + strand, within GFF5102at 204.128 kb on + strand, within GFF5102at 204.128 kb on + strand, within GFF5102at 204.216 kb on - strand, within GFF5102at 204.399 kb on - strand, within GFF5102at 204.753 kb on + strand, within GFF5103at 204.792 kb on + strand, within GFF5103at 204.792 kb on + strand, within GFF5103at 204.792 kb on + strand, within GFF5103at 204.792 kb on + strand, within GFF5103at 204.792 kb on + strand, within GFF5103at 204.792 kb on + strand, within GFF5103at 204.793 kb on - strand, within GFF5103at 204.793 kb on - strand, within GFF5103at 204.793 kb on - strand, within GFF5103at 204.793 kb on - strand, within GFF5103at 204.793 kb on - strand, within GFF5103at 204.793 kb on - strand, within GFF5103at 204.793 kb on - strand, within GFF5103at 204.873 kb on + strand, within GFF5103at 204.873 kb on + strand, within GFF5103at 204.873 kb on + strand, within GFF5103at 204.873 kb on + strand, within GFF5103at 204.873 kb on + strand, within GFF5103at 204.874 kb on - strand, within GFF5103at 204.874 kb on - strand, within GFF5103at 204.874 kb on - strand, within GFF5103at 204.874 kb on - strand, within GFF5103at 204.874 kb on - strand, within GFF5103at 205.084 kb on - strand, within GFF5103at 205.084 kb on - strand, within GFF5103at 205.084 kb on - strand, within GFF5103at 205.113 kb on + strand, within GFF5103at 205.113 kb on + strand, within GFF5103at 205.440 kb on + strandat 205.441 kb on - strandat 205.441 kb on - strandat 205.480 kb on + strandat 205.480 kb on + strandat 205.481 kb on - strandat 205.481 kb on - strandat 206.167 kb on + strand, within GFF5104at 206.168 kb on - strand, within GFF5104at 206.168 kb on - strand, within GFF5104at 206.449 kb on + strandat 206.449 kb on + strandat 206.449 kb on + strandat 206.450 kb on - strandat 206.450 kb on - strandat 206.450 kb on - strandat 206.450 kb on - strandat 206.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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203,891 + GFF5102 0.25 -1.7
203,891 + GFF5102 0.25 -0.6
203,958 - GFF5102 0.31 +0.1
203,958 - GFF5102 0.31 -0.2
203,969 + GFF5102 0.33 -0.1
203,969 + GFF5102 0.33 -1.2
203,969 + GFF5102 0.33 +0.1
203,969 + GFF5102 0.33 -1.7
203,969 + GFF5102 0.33 +1.0
203,969 + GFF5102 0.33 -0.6
203,969 + GFF5102 0.33 +0.4
203,969 + GFF5102 0.33 +0.2
203,969 + GFF5102 0.33 -0.8
203,969 + GFF5102 0.33 -0.9
203,969 + GFF5102 0.33 +0.0
203,970 - GFF5102 0.33 -1.2
203,970 - GFF5102 0.33 -0.5
203,970 - GFF5102 0.33 -1.0
203,970 - GFF5102 0.33 -0.6
203,970 - GFF5102 0.33 -0.4
203,984 + GFF5102 0.34 -1.1
203,984 + GFF5102 0.34 -0.4
203,984 + GFF5102 0.34 -0.1
203,985 - GFF5102 0.34 +0.2
203,985 - GFF5102 0.34 -1.4
203,985 - GFF5102 0.34 +0.1
204,128 + GFF5102 0.48 -0.6
204,128 + GFF5102 0.48 +1.3
204,128 + GFF5102 0.48 +1.0
204,128 + GFF5102 0.48 -0.2
204,216 - GFF5102 0.57 -1.7
204,399 - GFF5102 0.76 +1.0
204,753 + GFF5103 0.12 -0.8
204,792 + GFF5103 0.17 +0.4
204,792 + GFF5103 0.17 -0.8
204,792 + GFF5103 0.17 +0.4
204,792 + GFF5103 0.17 +0.4
204,792 + GFF5103 0.17 -0.4
204,792 + GFF5103 0.17 -1.7
204,793 - GFF5103 0.17 -0.6
204,793 - GFF5103 0.17 -0.2
204,793 - GFF5103 0.17 -2.6
204,793 - GFF5103 0.17 -0.8
204,793 - GFF5103 0.17 -0.6
204,793 - GFF5103 0.17 -0.5
204,793 - GFF5103 0.17 -2.1
204,873 + GFF5103 0.27 -0.0
204,873 + GFF5103 0.27 +0.1
204,873 + GFF5103 0.27 +0.1
204,873 + GFF5103 0.27 -0.5
204,873 + GFF5103 0.27 -0.4
204,874 - GFF5103 0.27 -1.1
204,874 - GFF5103 0.27 -0.2
204,874 - GFF5103 0.27 -0.7
204,874 - GFF5103 0.27 +0.2
204,874 - GFF5103 0.27 -0.2
205,084 - GFF5103 0.54 +0.7
205,084 - GFF5103 0.54 +0.5
205,084 - GFF5103 0.54 +0.5
205,113 + GFF5103 0.57 -0.7
205,113 + GFF5103 0.57 -1.3
205,440 + -0.4
205,441 - -1.7
205,441 - +0.2
205,480 + -0.7
205,480 + -0.5
205,481 - -0.2
205,481 - -0.5
206,167 + GFF5104 0.71 -0.7
206,168 - GFF5104 0.71 -1.6
206,168 - GFF5104 0.71 +0.8
206,449 + -0.1
206,449 + -1.4
206,449 + +0.3
206,450 - -0.0
206,450 - -1.4
206,450 - +0.2
206,450 - -0.1
206,450 - -0.8

Or see this region's nucleotide sequence