Strain Fitness in Variovorax sp. SCN45 around GFF5024

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5023 and GFF5024 are separated by 18 nucleotidesGFF5024 and GFF5025 are separated by 25 nucleotides GFF5023 - Ammonium transporter, at 124,766 to 126,001 GFF5023 GFF5024 - hypothetical protein, at 126,020 to 126,322 GFF5024 GFF5025 - Aspartate aminotransferase (EC 2.6.1.1), at 126,348 to 127,583 GFF5025 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 125.039 kb on + strand, within GFF5023at 125.039 kb on + strand, within GFF5023at 125.039 kb on + strand, within GFF5023at 125.039 kb on + strand, within GFF5023at 125.040 kb on - strand, within GFF5023at 125.040 kb on - strand, within GFF5023at 125.040 kb on - strand, within GFF5023at 125.102 kb on + strand, within GFF5023at 125.102 kb on + strand, within GFF5023at 125.103 kb on - strand, within GFF5023at 125.103 kb on - strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.222 kb on + strand, within GFF5023at 125.223 kb on - strand, within GFF5023at 125.223 kb on - strand, within GFF5023at 125.223 kb on - strand, within GFF5023at 125.223 kb on - strand, within GFF5023at 125.345 kb on + strand, within GFF5023at 125.345 kb on + strand, within GFF5023at 125.346 kb on - strand, within GFF5023at 125.346 kb on - strand, within GFF5023at 125.346 kb on - strand, within GFF5023at 125.393 kb on + strand, within GFF5023at 125.393 kb on + strand, within GFF5023at 125.394 kb on - strand, within GFF5023at 125.394 kb on - strand, within GFF5023at 125.394 kb on - strand, within GFF5023at 125.394 kb on - strand, within GFF5023at 125.693 kb on + strand, within GFF5023at 125.693 kb on + strand, within GFF5023at 125.693 kb on + strand, within GFF5023at 125.693 kb on + strand, within GFF5023at 125.693 kb on + strand, within GFF5023at 125.693 kb on + strand, within GFF5023at 125.693 kb on + strand, within GFF5023at 125.694 kb on - strand, within GFF5023at 125.694 kb on - strand, within GFF5023at 125.876 kb on + strand, within GFF5023at 125.876 kb on + strand, within GFF5023at 125.876 kb on + strand, within GFF5023at 125.876 kb on + strand, within GFF5023at 125.876 kb on + strand, within GFF5023at 125.876 kb on + strand, within GFF5023at 125.876 kb on + strand, within GFF5023at 125.877 kb on - strand, within GFF5023at 125.877 kb on - strand, within GFF5023at 125.877 kb on - strand, within GFF5023at 125.877 kb on - strand, within GFF5023at 125.877 kb on - strand, within GFF5023at 125.877 kb on - strand, within GFF5023at 126.134 kb on + strand, within GFF5024at 126.134 kb on + strand, within GFF5024at 126.134 kb on + strand, within GFF5024at 126.134 kb on + strand, within GFF5024at 126.134 kb on + strand, within GFF5024at 126.135 kb on - strand, within GFF5024at 126.135 kb on - strand, within GFF5024at 126.135 kb on - strand, within GFF5024at 126.197 kb on + strand, within GFF5024at 126.197 kb on + strand, within GFF5024at 126.197 kb on + strand, within GFF5024at 126.197 kb on + strand, within GFF5024at 126.197 kb on + strand, within GFF5024at 126.197 kb on + strand, within GFF5024at 126.198 kb on - strand, within GFF5024at 126.198 kb on - strand, within GFF5024at 126.198 kb on - strand, within GFF5024at 126.198 kb on - strand, within GFF5024at 126.198 kb on - strand, within GFF5024at 126.198 kb on - strand, within GFF5024at 126.302 kb on + strandat 126.303 kb on - strandat 126.303 kb on - strandat 126.418 kb on + strandat 126.418 kb on + strandat 126.418 kb on + strandat 126.418 kb on + strandat 126.418 kb on + strandat 126.418 kb on + strandat 126.419 kb on - strandat 126.419 kb on - strandat 126.419 kb on - strandat 126.419 kb on - strandat 126.419 kb on - strandat 126.419 kb on - strandat 126.433 kb on + strandat 126.493 kb on + strand, within GFF5025at 126.493 kb on + strand, within GFF5025at 126.494 kb on - strand, within GFF5025at 126.494 kb on - strand, within GFF5025at 126.494 kb on - strand, within GFF5025at 126.494 kb on - strand, within GFF5025at 126.577 kb on + strand, within GFF5025at 126.577 kb on + strand, within GFF5025at 126.577 kb on + strand, within GFF5025at 126.577 kb on + strand, within GFF5025at 126.578 kb on - strand, within GFF5025at 126.578 kb on - strand, within GFF5025at 126.578 kb on - strand, within GFF5025at 126.829 kb on + strand, within GFF5025at 126.829 kb on + strand, within GFF5025at 126.829 kb on + strand, within GFF5025at 126.829 kb on + strand, within GFF5025at 126.830 kb on - strand, within GFF5025at 126.830 kb on - strand, within GFF5025at 126.830 kb on - strand, within GFF5025at 126.830 kb on - strand, within GFF5025at 126.830 kb on - strand, within GFF5025at 126.830 kb on - strand, within GFF5025at 126.916 kb on + strand, within GFF5025at 126.916 kb on + strand, within GFF5025at 126.916 kb on + strand, within GFF5025at 126.916 kb on + strand, within GFF5025at 126.917 kb on - strand, within GFF5025at 126.917 kb on - strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.931 kb on + strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 126.932 kb on - strand, within GFF5025at 127.009 kb on + strand, within GFF5025at 127.009 kb on + strand, within GFF5025at 127.009 kb on + strand, within GFF5025at 127.009 kb on + strand, within GFF5025at 127.010 kb on - strand, within GFF5025at 127.010 kb on - strand, within GFF5025at 127.168 kb on + strand, within GFF5025at 127.168 kb on + strand, within GFF5025at 127.168 kb on + strand, within GFF5025at 127.169 kb on - strand, within GFF5025at 127.169 kb on - strand, within GFF5025at 127.169 kb on - strand, within GFF5025at 127.169 kb on - strand, within GFF5025at 127.169 kb on - strand, within GFF5025at 127.180 kb on + strand, within GFF5025at 127.180 kb on + strand, within GFF5025

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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125,039 + GFF5023 0.22 +0.1
125,039 + GFF5023 0.22 +0.5
125,039 + GFF5023 0.22 -0.3
125,039 + GFF5023 0.22 -0.0
125,040 - GFF5023 0.22 -0.8
125,040 - GFF5023 0.22 -0.5
125,040 - GFF5023 0.22 -0.7
125,102 + GFF5023 0.27 -0.2
125,102 + GFF5023 0.27 -0.7
125,103 - GFF5023 0.27 -1.0
125,103 - GFF5023 0.27 -0.3
125,222 + GFF5023 0.37 -0.4
125,222 + GFF5023 0.37 +0.8
125,222 + GFF5023 0.37 -0.1
125,222 + GFF5023 0.37 -1.0
125,222 + GFF5023 0.37 +1.3
125,222 + GFF5023 0.37 +0.4
125,222 + GFF5023 0.37 -0.3
125,222 + GFF5023 0.37 -0.6
125,222 + GFF5023 0.37 -0.3
125,222 + GFF5023 0.37 -0.7
125,223 - GFF5023 0.37 -0.2
125,223 - GFF5023 0.37 -0.8
125,223 - GFF5023 0.37 +0.4
125,223 - GFF5023 0.37 -0.4
125,345 + GFF5023 0.47 -0.4
125,345 + GFF5023 0.47 -0.6
125,346 - GFF5023 0.47 +0.6
125,346 - GFF5023 0.47 -1.2
125,346 - GFF5023 0.47 -0.7
125,393 + GFF5023 0.51 -0.3
125,393 + GFF5023 0.51 -0.3
125,394 - GFF5023 0.51 +2.0
125,394 - GFF5023 0.51 +0.4
125,394 - GFF5023 0.51 -0.4
125,394 - GFF5023 0.51 -2.6
125,693 + GFF5023 0.75 -0.2
125,693 + GFF5023 0.75 -0.8
125,693 + GFF5023 0.75 -0.3
125,693 + GFF5023 0.75 -0.8
125,693 + GFF5023 0.75 -0.7
125,693 + GFF5023 0.75 -0.0
125,693 + GFF5023 0.75 -1.2
125,694 - GFF5023 0.75 -0.1
125,694 - GFF5023 0.75 -1.7
125,876 + GFF5023 0.90 -0.1
125,876 + GFF5023 0.90 -0.4
125,876 + GFF5023 0.90 -0.8
125,876 + GFF5023 0.90 -0.8
125,876 + GFF5023 0.90 +0.1
125,876 + GFF5023 0.90 +1.1
125,876 + GFF5023 0.90 +0.2
125,877 - GFF5023 0.90 -0.8
125,877 - GFF5023 0.90 -0.1
125,877 - GFF5023 0.90 -1.7
125,877 - GFF5023 0.90 +1.0
125,877 - GFF5023 0.90 +0.2
125,877 - GFF5023 0.90 -0.5
126,134 + GFF5024 0.38 +0.1
126,134 + GFF5024 0.38 +1.6
126,134 + GFF5024 0.38 -0.8
126,134 + GFF5024 0.38 -0.1
126,134 + GFF5024 0.38 -0.4
126,135 - GFF5024 0.38 -1.6
126,135 - GFF5024 0.38 -0.2
126,135 - GFF5024 0.38 -0.3
126,197 + GFF5024 0.58 +0.2
126,197 + GFF5024 0.58 -1.5
126,197 + GFF5024 0.58 -0.3
126,197 + GFF5024 0.58 +0.6
126,197 + GFF5024 0.58 +0.2
126,197 + GFF5024 0.58 -0.4
126,198 - GFF5024 0.59 -0.2
126,198 - GFF5024 0.59 -0.0
126,198 - GFF5024 0.59 -0.2
126,198 - GFF5024 0.59 -1.7
126,198 - GFF5024 0.59 -0.4
126,198 - GFF5024 0.59 -0.6
126,302 + +0.3
126,303 - +0.0
126,303 - +0.1
126,418 + -0.9
126,418 + -0.8
126,418 + -0.6
126,418 + -1.8
126,418 + -0.8
126,418 + -0.6
126,419 - -0.3
126,419 - -0.9
126,419 - +0.6
126,419 - -0.0
126,419 - +0.1
126,419 - -0.6
126,433 + +0.6
126,493 + GFF5025 0.12 -1.0
126,493 + GFF5025 0.12 -0.1
126,494 - GFF5025 0.12 +0.1
126,494 - GFF5025 0.12 +0.0
126,494 - GFF5025 0.12 +0.1
126,494 - GFF5025 0.12 -0.4
126,577 + GFF5025 0.19 +0.2
126,577 + GFF5025 0.19 -1.4
126,577 + GFF5025 0.19 -0.6
126,577 + GFF5025 0.19 -0.4
126,578 - GFF5025 0.19 -0.4
126,578 - GFF5025 0.19 +1.2
126,578 - GFF5025 0.19 +0.9
126,829 + GFF5025 0.39 -0.7
126,829 + GFF5025 0.39 -0.0
126,829 + GFF5025 0.39 +1.0
126,829 + GFF5025 0.39 -1.8
126,830 - GFF5025 0.39 -0.4
126,830 - GFF5025 0.39 -0.3
126,830 - GFF5025 0.39 +0.6
126,830 - GFF5025 0.39 -0.3
126,830 - GFF5025 0.39 -0.0
126,830 - GFF5025 0.39 -0.5
126,916 + GFF5025 0.46 +0.2
126,916 + GFF5025 0.46 -0.1
126,916 + GFF5025 0.46 -0.2
126,916 + GFF5025 0.46 +0.6
126,917 - GFF5025 0.46 +0.4
126,917 - GFF5025 0.46 -1.0
126,931 + GFF5025 0.47 -0.1
126,931 + GFF5025 0.47 +0.3
126,931 + GFF5025 0.47 -0.4
126,931 + GFF5025 0.47 -0.9
126,931 + GFF5025 0.47 +1.0
126,931 + GFF5025 0.47 -0.8
126,931 + GFF5025 0.47 -0.0
126,931 + GFF5025 0.47 +0.2
126,931 + GFF5025 0.47 -0.9
126,931 + GFF5025 0.47 +0.8
126,931 + GFF5025 0.47 -0.6
126,931 + GFF5025 0.47 -0.6
126,931 + GFF5025 0.47 -1.0
126,931 + GFF5025 0.47 -0.8
126,932 - GFF5025 0.47 +0.0
126,932 - GFF5025 0.47 -0.7
126,932 - GFF5025 0.47 -0.6
126,932 - GFF5025 0.47 -0.2
126,932 - GFF5025 0.47 -0.1
126,932 - GFF5025 0.47 -0.5
126,932 - GFF5025 0.47 -0.9
126,932 - GFF5025 0.47 -0.2
126,932 - GFF5025 0.47 -1.5
126,932 - GFF5025 0.47 +1.6
126,932 - GFF5025 0.47 -1.0
126,932 - GFF5025 0.47 -0.1
126,932 - GFF5025 0.47 +0.1
126,932 - GFF5025 0.47 -0.2
126,932 - GFF5025 0.47 -1.0
126,932 - GFF5025 0.47 -0.0
127,009 + GFF5025 0.53 -0.7
127,009 + GFF5025 0.53 -0.6
127,009 + GFF5025 0.53 -0.4
127,009 + GFF5025 0.53 +1.7
127,010 - GFF5025 0.54 +0.4
127,010 - GFF5025 0.54 +1.3
127,168 + GFF5025 0.66 +0.9
127,168 + GFF5025 0.66 +0.1
127,168 + GFF5025 0.66 -1.3
127,169 - GFF5025 0.66 -1.5
127,169 - GFF5025 0.66 +2.6
127,169 - GFF5025 0.66 -0.2
127,169 - GFF5025 0.66 -0.7
127,169 - GFF5025 0.66 +1.6
127,180 + GFF5025 0.67 -0.2
127,180 + GFF5025 0.67 -0.2

Or see this region's nucleotide sequence