Strain Fitness in Variovorax sp. SCN45 around GFF4988

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4986 and GFF4987 are separated by 30 nucleotidesGFF4987 and GFF4988 are separated by 63 nucleotidesGFF4988 and GFF4989 are separated by 120 nucleotides GFF4986 - 3-hydroxybenzoate 6-monooxygenase (EC 1.14.13.24), at 86,633 to 87,856 GFF4986 GFF4987 - 3-fumarylpyruvate hydrolase (EC 3.7.1.20), at 87,887 to 88,591 GFF4987 GFF4988 - Gentisate 1,2-dioxygenase (EC 1.13.11.4), at 88,655 to 89,716 GFF4988 GFF4989 - Transcriptional regulator, LysR family, at 89,837 to 90,733 GFF4989 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1 2 3at 87.933 kb on + strandat 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.491 kb on + strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.509 kb on + strand, within GFF4987at 88.509 kb on + strand, within GFF4987at 88.857 kb on + strand, within GFF4988at 88.858 kb on - strand, within GFF4988at 88.858 kb on - strand, within GFF4988at 88.968 kb on + strand, within GFF4988at 88.968 kb on + strand, within GFF4988at 88.968 kb on + strand, within GFF4988at 88.969 kb on - strand, within GFF4988at 89.046 kb on + strand, within GFF4988at 89.047 kb on - strand, within GFF4988at 89.047 kb on - strand, within GFF4988at 89.047 kb on - strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.316 kb on + strand, within GFF4988at 89.316 kb on + strand, within GFF4988at 89.317 kb on - strand, within GFF4988at 89.317 kb on - strand, within GFF4988at 89.317 kb on - strand, within GFF4988at 89.317 kb on - strand, within GFF4988at 89.349 kb on + strand, within GFF4988at 89.350 kb on - strand, within GFF4988at 89.445 kb on + strand, within GFF4988at 89.445 kb on + strand, within GFF4988at 89.446 kb on - strand, within GFF4988at 89.446 kb on - strand, within GFF4988at 89.571 kb on + strand, within GFF4988at 89.673 kb on + strandat 89.673 kb on + strandat 89.673 kb on + strandat 89.673 kb on + strandat 89.673 kb on + strandat 89.673 kb on + strandat 89.673 kb on + strandat 89.673 kb on + strandat 89.673 kb on + strandat 89.676 kb on + strandat 89.677 kb on - strandat 89.760 kb on + strandat 89.785 kb on - strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.883 kb on - strandat 89.883 kb on - strandat 89.883 kb on - strandat 89.883 kb on - strandat 89.883 kb on - strandat 89.883 kb on - strandat 90.038 kb on + strand, within GFF4989at 90.038 kb on + strand, within GFF4989at 90.039 kb on - strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.312 kb on - strand, within GFF4989at 90.312 kb on - strand, within GFF4989at 90.638 kb on + strand, within GFF4989at 90.639 kb on - strand, within GFF4989

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
87,933 + -0.6
88,260 + GFF4987 0.53 -0.5
88,260 + GFF4987 0.53 -1.2
88,260 + GFF4987 0.53 -0.5
88,260 + GFF4987 0.53 -1.7
88,260 + GFF4987 0.53 -1.0
88,260 + GFF4987 0.53 +0.2
88,260 + GFF4987 0.53 -0.0
88,260 + GFF4987 0.53 -0.7
88,261 - GFF4987 0.53 -0.4
88,261 - GFF4987 0.53 -0.6
88,261 - GFF4987 0.53 +0.2
88,261 - GFF4987 0.53 -1.8
88,261 - GFF4987 0.53 +0.0
88,261 - GFF4987 0.53 +0.0
88,261 - GFF4987 0.53 -0.6
88,261 - GFF4987 0.53 -0.2
88,341 + GFF4987 0.64 -0.5
88,341 + GFF4987 0.64 -0.8
88,341 + GFF4987 0.64 +0.7
88,341 + GFF4987 0.64 +0.9
88,342 - GFF4987 0.65 -0.1
88,342 - GFF4987 0.65 -0.7
88,342 - GFF4987 0.65 -0.1
88,342 - GFF4987 0.65 -0.5
88,342 - GFF4987 0.65 -0.4
88,347 + GFF4987 0.65 +0.2
88,347 + GFF4987 0.65 -0.0
88,347 + GFF4987 0.65 -0.5
88,347 + GFF4987 0.65 -0.3
88,347 + GFF4987 0.65 -0.1
88,347 + GFF4987 0.65 -0.9
88,347 + GFF4987 0.65 +0.5
88,348 - GFF4987 0.65 -0.4
88,348 - GFF4987 0.65 -0.2
88,348 - GFF4987 0.65 -1.1
88,348 - GFF4987 0.65 -0.5
88,348 - GFF4987 0.65 -0.6
88,348 - GFF4987 0.65 -1.0
88,348 - GFF4987 0.65 -1.5
88,491 + GFF4987 0.86 -0.8
88,492 - GFF4987 0.86 +0.2
88,492 - GFF4987 0.86 -0.4
88,492 - GFF4987 0.86 +0.4
88,492 - GFF4987 0.86 -1.4
88,492 - GFF4987 0.86 -0.5
88,509 + GFF4987 0.88 +0.2
88,509 + GFF4987 0.88 -0.1
88,857 + GFF4988 0.19 -0.3
88,858 - GFF4988 0.19 +0.7
88,858 - GFF4988 0.19 +0.3
88,968 + GFF4988 0.29 +0.2
88,968 + GFF4988 0.29 -0.8
88,968 + GFF4988 0.29 +0.7
88,969 - GFF4988 0.30 -0.1
89,046 + GFF4988 0.37 -0.4
89,047 - GFF4988 0.37 +0.6
89,047 - GFF4988 0.37 -0.6
89,047 - GFF4988 0.37 -1.6
89,052 + GFF4988 0.37 -0.4
89,052 + GFF4988 0.37 -0.6
89,052 + GFF4988 0.37 -0.8
89,052 + GFF4988 0.37 -1.0
89,052 + GFF4988 0.37 -1.0
89,052 + GFF4988 0.37 +0.8
89,052 + GFF4988 0.37 +1.5
89,052 + GFF4988 0.37 -1.6
89,052 + GFF4988 0.37 +0.6
89,052 + GFF4988 0.37 +0.4
89,052 + GFF4988 0.37 +0.4
89,053 - GFF4988 0.37 -1.6
89,053 - GFF4988 0.37 -0.5
89,053 - GFF4988 0.37 -0.3
89,053 - GFF4988 0.37 +0.2
89,053 - GFF4988 0.37 +0.6
89,053 - GFF4988 0.37 -0.4
89,316 + GFF4988 0.62 +2.0
89,316 + GFF4988 0.62 +0.1
89,317 - GFF4988 0.62 +0.8
89,317 - GFF4988 0.62 +1.0
89,317 - GFF4988 0.62 -1.0
89,317 - GFF4988 0.62 +1.4
89,349 + GFF4988 0.65 -1.4
89,350 - GFF4988 0.65 +1.2
89,445 + GFF4988 0.74 +0.3
89,445 + GFF4988 0.74 -0.4
89,446 - GFF4988 0.74 +2.4
89,446 - GFF4988 0.74 -0.8
89,571 + GFF4988 0.86 +1.6
89,673 + +0.5
89,673 + -1.1
89,673 + +0.2
89,673 + -0.7
89,673 + +0.6
89,673 + -0.6
89,673 + +0.1
89,673 + -0.5
89,673 + -1.0
89,676 + -0.4
89,677 - -0.4
89,760 + -1.1
89,785 - -0.7
89,882 + -0.2
89,882 + -1.4
89,882 + +0.5
89,882 + +0.4
89,882 + +0.1
89,882 + +0.2
89,882 + -0.4
89,882 + -0.8
89,883 - -0.6
89,883 - +0.7
89,883 - -1.5
89,883 - +0.2
89,883 - -1.0
89,883 - -0.2
90,038 + GFF4989 0.22 -0.4
90,038 + GFF4989 0.22 -1.3
90,039 - GFF4989 0.23 +0.4
90,311 + GFF4989 0.53 +2.6
90,311 + GFF4989 0.53 -0.8
90,311 + GFF4989 0.53 -0.5
90,311 + GFF4989 0.53 -0.6
90,311 + GFF4989 0.53 -1.6
90,312 - GFF4989 0.53 -1.3
90,312 - GFF4989 0.53 +0.5
90,638 + GFF4989 0.89 +3.0
90,639 - GFF4989 0.89 -1.0

Or see this region's nucleotide sequence