Strain Fitness in Variovorax sp. SCN45 around GFF4987

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4986 and GFF4987 are separated by 30 nucleotidesGFF4987 and GFF4988 are separated by 63 nucleotides GFF4986 - 3-hydroxybenzoate 6-monooxygenase (EC 1.14.13.24), at 86,633 to 87,856 GFF4986 GFF4987 - 3-fumarylpyruvate hydrolase (EC 3.7.1.20), at 87,887 to 88,591 GFF4987 GFF4988 - Gentisate 1,2-dioxygenase (EC 1.13.11.4), at 88,655 to 89,716 GFF4988 Position (kb) 87 88 89Strain fitness (log2 ratio) -2 -1 0 1 2at 86.946 kb on + strand, within GFF4986at 86.946 kb on + strand, within GFF4986at 86.947 kb on - strand, within GFF4986at 86.947 kb on - strand, within GFF4986at 86.947 kb on - strand, within GFF4986at 87.096 kb on + strand, within GFF4986at 87.096 kb on + strand, within GFF4986at 87.096 kb on + strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.202 kb on - strand, within GFF4986at 87.202 kb on - strand, within GFF4986at 87.285 kb on - strand, within GFF4986at 87.294 kb on + strand, within GFF4986at 87.294 kb on + strand, within GFF4986at 87.295 kb on - strand, within GFF4986at 87.295 kb on - strand, within GFF4986at 87.541 kb on - strand, within GFF4986at 87.541 kb on - strand, within GFF4986at 87.541 kb on - strand, within GFF4986at 87.933 kb on + strandat 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.491 kb on + strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.509 kb on + strand, within GFF4987at 88.509 kb on + strand, within GFF4987at 88.857 kb on + strand, within GFF4988at 88.858 kb on - strand, within GFF4988at 88.858 kb on - strand, within GFF4988at 88.968 kb on + strand, within GFF4988at 88.968 kb on + strand, within GFF4988at 88.968 kb on + strand, within GFF4988at 88.969 kb on - strand, within GFF4988at 89.046 kb on + strand, within GFF4988at 89.047 kb on - strand, within GFF4988at 89.047 kb on - strand, within GFF4988at 89.047 kb on - strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.052 kb on + strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.053 kb on - strand, within GFF4988at 89.316 kb on + strand, within GFF4988at 89.316 kb on + strand, within GFF4988at 89.317 kb on - strand, within GFF4988at 89.317 kb on - strand, within GFF4988at 89.317 kb on - strand, within GFF4988at 89.317 kb on - strand, within GFF4988at 89.349 kb on + strand, within GFF4988at 89.350 kb on - strand, within GFF4988at 89.445 kb on + strand, within GFF4988at 89.445 kb on + strand, within GFF4988at 89.446 kb on - strand, within GFF4988at 89.446 kb on - strand, within GFF4988at 89.571 kb on + strand, within GFF4988

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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86,946 + GFF4986 0.26 -1.9
86,946 + GFF4986 0.26 -1.1
86,947 - GFF4986 0.26 +2.0
86,947 - GFF4986 0.26 -0.0
86,947 - GFF4986 0.26 -1.6
87,096 + GFF4986 0.38 -0.1
87,096 + GFF4986 0.38 -1.1
87,096 + GFF4986 0.38 -1.3
87,097 - GFF4986 0.38 -1.1
87,097 - GFF4986 0.38 -0.4
87,097 - GFF4986 0.38 -1.3
87,097 - GFF4986 0.38 +1.7
87,177 + GFF4986 0.44 +0.6
87,177 + GFF4986 0.44 +0.8
87,177 + GFF4986 0.44 -1.0
87,177 + GFF4986 0.44 -0.1
87,177 + GFF4986 0.44 -1.4
87,177 + GFF4986 0.44 -0.8
87,177 + GFF4986 0.44 +0.4
87,177 + GFF4986 0.44 +0.6
87,177 + GFF4986 0.44 +1.4
87,177 + GFF4986 0.44 -0.9
87,177 + GFF4986 0.44 -1.6
87,177 + GFF4986 0.44 -0.1
87,178 - GFF4986 0.45 -1.2
87,178 - GFF4986 0.45 -0.4
87,178 - GFF4986 0.45 -0.6
87,178 - GFF4986 0.45 -1.6
87,178 - GFF4986 0.45 -1.2
87,178 - GFF4986 0.45 -1.5
87,178 - GFF4986 0.45 -0.0
87,178 - GFF4986 0.45 -0.3
87,178 - GFF4986 0.45 +0.1
87,202 - GFF4986 0.46 -0.5
87,202 - GFF4986 0.46 +0.1
87,285 - GFF4986 0.53 -0.8
87,294 + GFF4986 0.54 +0.7
87,294 + GFF4986 0.54 -1.4
87,295 - GFF4986 0.54 +1.1
87,295 - GFF4986 0.54 -1.4
87,541 - GFF4986 0.74 -0.1
87,541 - GFF4986 0.74 -1.0
87,541 - GFF4986 0.74 +0.8
87,933 + -0.6
88,260 + GFF4987 0.53 -0.5
88,260 + GFF4987 0.53 -1.2
88,260 + GFF4987 0.53 -0.5
88,260 + GFF4987 0.53 -1.7
88,260 + GFF4987 0.53 -1.0
88,260 + GFF4987 0.53 +0.2
88,260 + GFF4987 0.53 -0.0
88,260 + GFF4987 0.53 -0.7
88,261 - GFF4987 0.53 -0.4
88,261 - GFF4987 0.53 -0.6
88,261 - GFF4987 0.53 +0.2
88,261 - GFF4987 0.53 -1.8
88,261 - GFF4987 0.53 +0.0
88,261 - GFF4987 0.53 +0.0
88,261 - GFF4987 0.53 -0.6
88,261 - GFF4987 0.53 -0.2
88,341 + GFF4987 0.64 -0.5
88,341 + GFF4987 0.64 -0.8
88,341 + GFF4987 0.64 +0.7
88,341 + GFF4987 0.64 +0.9
88,342 - GFF4987 0.65 -0.1
88,342 - GFF4987 0.65 -0.7
88,342 - GFF4987 0.65 -0.1
88,342 - GFF4987 0.65 -0.5
88,342 - GFF4987 0.65 -0.4
88,347 + GFF4987 0.65 +0.2
88,347 + GFF4987 0.65 -0.0
88,347 + GFF4987 0.65 -0.5
88,347 + GFF4987 0.65 -0.3
88,347 + GFF4987 0.65 -0.1
88,347 + GFF4987 0.65 -0.9
88,347 + GFF4987 0.65 +0.5
88,348 - GFF4987 0.65 -0.4
88,348 - GFF4987 0.65 -0.2
88,348 - GFF4987 0.65 -1.1
88,348 - GFF4987 0.65 -0.5
88,348 - GFF4987 0.65 -0.6
88,348 - GFF4987 0.65 -1.0
88,348 - GFF4987 0.65 -1.5
88,491 + GFF4987 0.86 -0.8
88,492 - GFF4987 0.86 +0.2
88,492 - GFF4987 0.86 -0.4
88,492 - GFF4987 0.86 +0.4
88,492 - GFF4987 0.86 -1.4
88,492 - GFF4987 0.86 -0.5
88,509 + GFF4987 0.88 +0.2
88,509 + GFF4987 0.88 -0.1
88,857 + GFF4988 0.19 -0.3
88,858 - GFF4988 0.19 +0.7
88,858 - GFF4988 0.19 +0.3
88,968 + GFF4988 0.29 +0.2
88,968 + GFF4988 0.29 -0.8
88,968 + GFF4988 0.29 +0.7
88,969 - GFF4988 0.30 -0.1
89,046 + GFF4988 0.37 -0.4
89,047 - GFF4988 0.37 +0.6
89,047 - GFF4988 0.37 -0.6
89,047 - GFF4988 0.37 -1.6
89,052 + GFF4988 0.37 -0.4
89,052 + GFF4988 0.37 -0.6
89,052 + GFF4988 0.37 -0.8
89,052 + GFF4988 0.37 -1.0
89,052 + GFF4988 0.37 -1.0
89,052 + GFF4988 0.37 +0.8
89,052 + GFF4988 0.37 +1.5
89,052 + GFF4988 0.37 -1.6
89,052 + GFF4988 0.37 +0.6
89,052 + GFF4988 0.37 +0.4
89,052 + GFF4988 0.37 +0.4
89,053 - GFF4988 0.37 -1.6
89,053 - GFF4988 0.37 -0.5
89,053 - GFF4988 0.37 -0.3
89,053 - GFF4988 0.37 +0.2
89,053 - GFF4988 0.37 +0.6
89,053 - GFF4988 0.37 -0.4
89,316 + GFF4988 0.62 +2.0
89,316 + GFF4988 0.62 +0.1
89,317 - GFF4988 0.62 +0.8
89,317 - GFF4988 0.62 +1.0
89,317 - GFF4988 0.62 -1.0
89,317 - GFF4988 0.62 +1.4
89,349 + GFF4988 0.65 -1.4
89,350 - GFF4988 0.65 +1.2
89,445 + GFF4988 0.74 +0.3
89,445 + GFF4988 0.74 -0.4
89,446 - GFF4988 0.74 +2.4
89,446 - GFF4988 0.74 -0.8
89,571 + GFF4988 0.86 +1.6

Or see this region's nucleotide sequence