Strain Fitness in Variovorax sp. SCN45 around GFF4982

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
81,677	+		GFF4981	0.59	-0.2
81,677	+		GFF4981	0.59	+0.0
81,678	-		GFF4981	0.59	-2.6
81,678	-		GFF4981	0.59	+1.0
81,884	+		GFF4981	0.68	+0.0
81,884	+		GFF4981	0.68	-0.7
81,885	-		GFF4981	0.68	-0.5
81,885	-		GFF4981	0.68	+0.5
82,058	+		GFF4981	0.76	-0.0
82,058	+		GFF4981	0.76	-0.1
82,058	+		GFF4981	0.76	+0.9
82,058	+		GFF4981	0.76	-1.9
82,059	-		GFF4981	0.76	-0.6
82,059	-		GFF4981	0.76	+0.6
82,059	-		GFF4981	0.76	-0.0
82,059	-		GFF4981	0.76	-0.6
82,059	-		GFF4981	0.76	-0.4
82,059	-		GFF4981	0.76	+0.3
82,331	+		GFF4981	0.88	-0.7
82,331	+		GFF4981	0.88	-0.0
82,331	+		GFF4981	0.88	-0.6
82,331	+		GFF4981	0.88	+1.7
82,331	+		GFF4981	0.88	+0.1
82,331	+		GFF4981	0.88	-0.6
82,331	+		GFF4981	0.88	-2.1
82,332	-		GFF4981	0.88	-0.3
82,332	-		GFF4981	0.88	-0.1
82,332	-		GFF4981	0.88	+0.5
82,332	-		GFF4981	0.88	-0.1
82,332	-		GFF4981	0.88	-1.0
82,332	-		GFF4981	0.88	-0.6
82,864	+		GFF4982	0.48	-0.1
82,864	+		GFF4982	0.48	+0.2
82,864	+		GFF4982	0.48	-1.5
82,864	+		GFF4982	0.48	-0.8
82,864	+		GFF4982	0.48	-1.2
82,864	+		GFF4982	0.48	+1.4
82,864	+		GFF4982	0.48	-0.2
82,864	+		GFF4982	0.48	-0.1
82,865	-		GFF4982	0.48	-1.6
82,865	-		GFF4982	0.48	-1.4
82,865	-		GFF4982	0.48	+0.5
82,865	-		GFF4982	0.48	-0.8
82,865	-		GFF4982	0.48	-0.1
82,865	-		GFF4982	0.48	+2.0
82,865	-		GFF4982	0.48	-0.8
82,865	-		GFF4982	0.48	+1.0
83,424	+		GFF4983	0.18	-0.4
83,424	+		GFF4983	0.18	-0.9
83,424	+		GFF4983	0.18	-0.5
83,424	+		GFF4983	0.18	-0.2
83,424	+		GFF4983	0.18	-0.9
83,424	+		GFF4983	0.18	+1.0
83,425	-		GFF4983	0.18	-0.3
83,425	-		GFF4983	0.18	-0.1
83,425	-		GFF4983	0.18	-0.8
83,425	-		GFF4983	0.18	+0.5
83,425	-		GFF4983	0.18	+1.2
83,425	-		GFF4983	0.18	-0.5
83,425	-		GFF4983	0.18	+0.2
83,425	-		GFF4983	0.18	+0.1
83,425	-		GFF4983	0.18	-0.8
83,482	-		GFF4983	0.22	-0.0
83,557	-		GFF4983	0.28	-0.1
83,557	-		GFF4983	0.28	-0.0
83,557	-		GFF4983	0.28	+0.4
83,557	-		GFF4983	0.28	+0.1
83,557	-		GFF4983	0.28	+0.4
83,557	-		GFF4983	0.28	+0.2
83,661	+		GFF4983	0.35	-0.8
83,661	+		GFF4983	0.35	+0.6
83,661	+		GFF4983	0.35	+1.6
83,661	+		GFF4983	0.35	-0.3
83,661	+		GFF4983	0.35	+0.6
83,661	+		GFF4983	0.35	-0.9
83,662	-		GFF4983	0.35	+0.4
83,662	-		GFF4983	0.35	+0.6
83,826	+		GFF4983	0.48	-0.7
83,827	-		GFF4983	0.48	-0.5
83,827	-		GFF4983	0.48	-0.4
83,827	-		GFF4983	0.48	-0.4
83,827	-		GFF4983	0.48	-0.8
83,827	-		GFF4983	0.48	+1.4
84,120	+		GFF4983	0.69	-0.4
84,120	+		GFF4983	0.69	+0.2
84,120	+		GFF4983	0.69	-0.2
84,120	+		GFF4983	0.69	-0.7
84,120	+		GFF4983	0.69	-0.1
84,120	+		GFF4983	0.69	-1.4
84,120	+		GFF4983	0.69	-0.8
84,120	+		GFF4983	0.69	+0.4
84,120	+		GFF4983	0.69	+0.4
84,120	+		GFF4983	0.69	+0.9
84,121	-		GFF4983	0.69	+1.2
84,121	-		GFF4983	0.69	-0.5
84,121	-		GFF4983	0.69	-0.0
84,121	-		GFF4983	0.69	-1.9
84,121	-		GFF4983	0.69	+0.4
84,121	-		GFF4983	0.69	-0.3
84,121	-		GFF4983	0.69	-0.4
84,121	-		GFF4983	0.69	-0.8
84,121	-		GFF4983	0.69	-0.7
84,121	-		GFF4983	0.69	+0.0
84,121	-		GFF4983	0.69	+0.3
84,121	-		GFF4983	0.69	-0.4
84,121	-		GFF4983	0.69	-1.1
84,121	-		GFF4983	0.69	-0.5
84,121	-		GFF4983	0.69	-0.3
84,121	-		GFF4983	0.69	-0.8
84,121	-		GFF4983	0.69	-0.2