Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4955 and GFF4956 are separated by 228 nucleotides GFF4956 and GFF4957 are separated by 164 nucleotides GFF4957 and GFF4958 are separated by 130 nucleotides
GFF4955 - hypothetical protein, at 54,911 to 56,917
GFF4955
GFF4956 - ATP synthase F0 sector subunit c (EC 3.6.3.14), at 57,146 to 57,385
GFF4956
GFF4957 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 57,550 to 58,755
GFF4957
GFF4958 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 58,886 to 59,806
GFF4958
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1 at 56.610 kb on + strand, within GFF4955 at 56.610 kb on + strand, within GFF4955 at 56.610 kb on + strand, within GFF4955 at 57.099 kb on + strand at 57.434 kb on + strand at 57.932 kb on - strand, within GFF4957 at 57.986 kb on - strand, within GFF4957 at 58.156 kb on + strand, within GFF4957 at 58.157 kb on - strand, within GFF4957 at 58.157 kb on - strand, within GFF4957 at 58.228 kb on + strand, within GFF4957 at 58.228 kb on + strand, within GFF4957 at 58.228 kb on + strand, within GFF4957 at 58.474 kb on + strand, within GFF4957 at 58.489 kb on + strand, within GFF4957 at 58.585 kb on + strand, within GFF4957 at 58.586 kb on - strand, within GFF4957 at 58.586 kb on - strand, within GFF4957 at 58.586 kb on - strand, within GFF4957 at 58.627 kb on + strand, within GFF4957 at 58.645 kb on + strand at 58.729 kb on + strand at 58.730 kb on - strand at 58.730 kb on - strand at 58.730 kb on - strand at 58.730 kb on - strand at 58.885 kb on + strand at 58.886 kb on - strand at 58.886 kb on - strand at 58.886 kb on - strand at 59.361 kb on - strand, within GFF4958 at 59.556 kb on + strand, within GFF4958 at 59.557 kb on - strand, within GFF4958 at 59.557 kb on - strand, within GFF4958 at 59.557 kb on - strand, within GFF4958 at 59.744 kb on + strand at 59.745 kb on - strand at 59.745 kb on - strand at 59.745 kb on - strand at 59.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 56,610 + GFF4955 0.85 +0.8 56,610 + GFF4955 0.85 -1.3 56,610 + GFF4955 0.85 -0.3 57,099 + +0.6 57,434 + +0.2 57,932 - GFF4957 0.32 -0.5 57,986 - GFF4957 0.36 +0.6 58,156 + GFF4957 0.50 +0.1 58,157 - GFF4957 0.50 -0.6 58,157 - GFF4957 0.50 -0.4 58,228 + GFF4957 0.56 +0.6 58,228 + GFF4957 0.56 -0.4 58,228 + GFF4957 0.56 +0.3 58,474 + GFF4957 0.77 +1.7 58,489 + GFF4957 0.78 +0.4 58,585 + GFF4957 0.86 +1.4 58,586 - GFF4957 0.86 -1.4 58,586 - GFF4957 0.86 -0.0 58,586 - GFF4957 0.86 +0.7 58,627 + GFF4957 0.89 +0.7 58,645 + -1.2 58,729 + +0.1 58,730 - -0.4 58,730 - +0.2 58,730 - -0.1 58,730 - -0.2 58,885 + +0.1 58,886 - +0.6 58,886 - +0.1 58,886 - +0.4 59,361 - GFF4958 0.52 +0.1 59,556 + GFF4958 0.73 -0.1 59,557 - GFF4958 0.73 -0.9 59,557 - GFF4958 0.73 -0.0 59,557 - GFF4958 0.73 -1.2 59,744 + -0.5 59,745 - +1.4 59,745 - -0.1 59,745 - +0.9 59,745 - +0.0
Or see this region's nucleotide sequence